Dictyostelium discoideum cDNA Contig-U16312-1

Assembled

Chromosomal Location of Contig-U16312-1

Sequence Contig-U16312-1

ACTGTTGGCC TACTGGCTCC AGTTTATTGT TGTGGTAATT CACCAAGCGC
AACAATTCAT AACCAAACCA CATTCCAATC ATGGTTTCAC AATGTTCCAG
GTGTGAATCT TCCAATTCAA AAAGATATCA TTCTTACACA ATCTCTTTCA
AATCCAAATA TTTATTCCTA CAGTAATGAT TCTTATTTTG TAATTGATGG
TCAAGGTTTT GATGACAAAT CAGTTTATCC AAATGAAAGA GTTTATCGTG
ACGCTTTTGG AAATCCACAT AATTTCCACT TTTGTTTACA AGCTCATACC
GAATTTCAAT ATAAAACTGG TGATGTTTTT AATTTTGCAG GTGATGATGA
TGTTTGGGTA TTTATTAATA ATATTTTGGT TGTGGATTTG GGAGGTATTC
ATACAATTGC AAGTGCAAGT GTTAACTTGG ATTTATTGGG TTTAACACCT
GGACAAAATT ATCCATTTGA TTTCTTTTAT TGTGAACGTC ACACTGTAGA
ATCTCATATA AGAATTGAAA CATCTTTGGC ATTCAAGTGT CCTCGATATG
ATGAATGTGG TGTCTGTGAA GGTGATGGTA CTTCTTGTTG TACTCCAAAT
AATTGTGATA ATAATCCAAT TTATAGAACC AACTGTATAA CAGCAAAATG
TTCAAATAAT GTTTGCGTTA CTTCAGCACC ATATTGCAGT TCAACCCGAA
CCATGTACAG TTGGTCTTTG TACACCAGGT GTTGGTTGTT CAGTTGTTCC
AAAAAATTGT GTAAATGAAA ATCATTGTAC CCAAGATTCA TGTAATTCAA
CTATAAATGC TTGCCCAACA TGATCCAATT CCAGATTGTA TCAATTGTGC
CTATATTGGT TGTATCACTA CTGATTATTG TAATGAACAA GTATGTTCAG
CTGATGGAAG ATCATGTGAA ACTAGACCAA AGAATTGTGA TGATTTAAAT
TTTTGTACTG TTGATACATG TTCAAATGGA GTTTGCATTT ACACAAGAAT
TGATAATTGT GTAAATTGTA CAGGTCCAGG TATTGGTTGT ATTACTACTG
ATCAATGTAA TCCAAATGTA TGTTCTCCAG ATGGTAATTC ATGTATCATT
CAACCAAAGA ATTGTTCAGA TGGTAATGCT TGTAATGATC CATCGTGTGT
TTCAGGTGGT ATGTGTATGT TAACCCCAGT GAATTGTGAT GATGGTGATG
ATTGTACTTT TGATTCATGC TCATCAACTG TAGGTTGCAT ACATACTAAT
ATATCTAATT GTGTAGAATG TCAAAATATT GCTTGTATTA CAACTGATTT
TTGTAATGTT AAGATTTGTA TTAATAATGG TACAACATGT GATACTGTTC
CAAAAACTTG TGATGATGGT GATTCATGTA CAATAGATTC TTGTGTCAGT
CCAAGTGGTG CATGCCTATA TGAGCCAATA GCCAATTGTG TTAATTGTGG
TGGAAATCAA TGTATAACAA CTGATTTTTG TTTACCATTA ATTTGTGGAC
CTGATGGTGT TACTTGTGCT GTTGAACCAA AGAAATGTGA TGATTTTAAC
CCATGTACTT TTGATTCTTG TATTTCTCCT CAAGGTGATT GTGGTAATGC
ACCAATTCCA GGTTGTGTAG CATGTAATGA AATTCTTGGA TGTACTACAA
CTGATCCATG TCACCCAATT ACTTGTTCAG CCATAGGTGA TCAATGTGTG
TCAACTGATA AAGATTGTGA AGATGGAAAT CATTGTACAA TTAACTCTTG
TCAAAATAAT AATGGAACTG CTACATGTTT AAATTCATTG ATTACCCATT
GTACTGATTG CCCAGGAATT GGATGTACTA CTACAGATTT TTGCTTCCAA
CCACTACTGG TTGTGCTGGT ACAACAACTG GCAGGGCTAC AGGTCATTAC
ACAGAATCAG GTACAGGTAA TCCACAT--- -------ACC ATGTATTACA
ACAGATAATT GTCAACCAGT TATTTGTGGT CCAGATGGAC GTTGTATCCA
AGAGACAATT GAAGATTTTT GTGATGATTA TAATTATTGC ACTGTTGATA
CATGCACAGG AGTAGGTTGT GAACATGCTT CAATTTCAGG TTGTCGTAAT
TGTACAAATG GAATTGGTTG TACAACACCA TCAGATGATG CATGTAATTT
ACAAGTATGT TCTGAAACTG GAGATAGTTG TCTTACAATG GTTTTAAAAT
TGTGATGATA ATAACGATTG GTACTGAAGA TAAGTGTTTA AATACTGGTA
TTTGTCAAAA ATAATCCAAT TGACGGGTTG TGTTACACCA TCACCAGTTT
CAATTGGTGG AAACTATCCC TCCAACCACT ACTGGTGTAT CACAAGTTGA
GTGTGATTGT TGTCCAATTG GTCAAAAAAT GTTTATTAGT CAATGGTCAT
GAAATTTGTA TTAAACCCAG CACACCACTG GTGGTATTCC AGAATTAACT
ACTGGTTGTG CTGGTACAAC AACTGGCAGG GCTACAGGTC ATTACACAGA
ATCAGGTACA GGGTAATCCA CATTTATGTG ATAGATATCA TTGTAAAAGA
GGAATGGAAT GTCATGTTGT TAATGGTGTT CCAGAATGTT TACCATCAAA
CTACAAATGT TTAGATTGTT TAGATCTTCA TTGTGAGAGA CAAGGTGATT
TCACCTGTTT TATGGTTAAA AATCCAAATT TCATTTCTTA GTAAAGCATA
GCTTGTTATG GTGAATCAAT GTTGTAAATT GCACACCAGT TTGCAAACCA
AAAGGACACT CACTTTAAAA AAAACTAAAA TTAATATATT ATTTCTTTTC
TTTTTATTAT ATATTTTTAT TAAAATTTTA TAACCAAGTC AACTAATTTC
AATTTAATAT TACAATATAA ACATTAAGTT TATTGTAAAA TTTAATAATA
AATAAAAAAA CAACTGCCCC A

Translated Amino Acid Sequence Contig-U16312-1

cwptgsslllw*ftkrnns*pnhipimvsqcsrcessnskryhsytisfkskylflq**f
lfcn*wsrf**qislsk*ksls*rfwkst*fpllftssyrisi*nw*cf*fcr***clgi
y**yfgcgfgrysynckckc*lgfigfntwtklsi*flll*tshcrisykn*nifgiqvs
si**mwcl*r*wyfllysk*l***snl*nqlynskmfk*clryfstilqfnpnhvqlvfv
hqvlvvqlfqkiv*mkiivpkihviql*MLAQHDPIPDCINCAYIGCITTDYCNEQVCSA
DGRSCETRPKNCDDLNFCTVDTCSNGVCIYTRIDNCVNCTGPGIGCITTDQCNPNVCSPD
GNSCIIQPKNCSDGNACNDPSCVSGGMCMLTPVNCDDGDDCTFDSCSSTVGCIHTNISNC
VECQNIACITTDFCNVKICINNGTTCDTVPKTCDDGDSCTIDSCVSPSGACLYEPIANCV
NCGGNQCITTDFCLPLICGPDGVTCAVEPKKCDDFNPCTFDSCISPQGDCGNAPIPGCVA
CNEILGCTTTDPCHPITCSAIGDQCVSTDKDCEDGNHCTINSCQNNNGTATCLNSLITHC
TDCPGIGCTTTDFCFQPLLVVLVQQLAGLQVITQNQVQVIH---

---PCITTDNCQPVICGPDGRCIQETIEDFCDDYNYCTVDTCTGVGCEHASISGCRNCTN
GIGCTTPSDDACNLQVCSETGDSCLTMVLKL****rlvlkisv*ilvfvknnpidglcyt
itsfnwwklslqpllvyhklsvivvqlvkkcllvngheicikpstplvvfqn*llvvlvq
qlaglqvitqnqvqgnphlcdryhckrgmechvvngvpeclpsnykcldcldlhcerqgd
ftcfmvknpnfis**siacygesml*iahqfanqkdthfkkn*n*yiisflfiiyfy*nf
itkstnfnlilqykh*vycki***ikkqlp

Homology Contig-U16312-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U16312-1 (Contig-U16312-1Q) /CSM_Contig/Conti...  5424  0.0
Contig-U16313-1 (Contig-U16313-1Q) /CSM_Contig/Conti...  3455  0.0
Contig-U13128-1 (Contig-U13128-1Q) /CSM_Contig/Conti...   835  0.0
Contig-U13311-1 (Contig-U13311-1Q) /CSM_Contig/Conti...   587  e-167
Contig-U15718-1 (Contig-U15718-1Q) /CSM_Contig/Conti...   216  1e-55
Contig-U14636-1 (Contig-U14636-1Q) /CSM_Contig/Conti...    76  3e-13
Contig-U13238-1 (Contig-U13238-1Q) /CSM_Contig/Conti...    76  3e-13
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti...    70  2e-11
Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Conti...    68  8e-11
Contig-U16497-1 (Contig-U16497-1Q) /CSM_Contig/Conti...    60  2e-08

Homology Contig-U16312-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ333614) Dictyostelium discoideum cDNA clone:dda43i09, 5' ...  1302   0.0    1
(BJ325868) Dictyostelium discoideum cDNA clone:dda2o15, 5' e...  1275   0.0    1
(BJ396774) Dictyostelium discoideum cDNA clone:dds43l22, 5' ...  1263   0.0    2
(BJ328434) Dictyostelium discoideum cDNA clone:dda28m04, 5' ...  1249   0.0    1
(BJ393169) Dictyostelium discoideum cDNA clone:dds30j10, 5' ...  1241   0.0    1
(BJ396692) Dictyostelium discoideum cDNA clone:dds43g18, 5' ...  1227   0.0    2
(BJ368980) Dictyostelium discoideum cDNA clone:ddc48f23, 5' ...  1213   0.0    1
(BJ368245) Dictyostelium discoideum cDNA clone:ddc45l21, 5' ...  1178   0.0    1
(BJ396129) Dictyostelium discoideum cDNA clone:dds41p11, 5' ...  1152   0.0    2
(BJ395038) Dictyostelium discoideum cDNA clone:dds37n10, 5' ...  1150   0.0    2

Homology Contig-U16312-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                789   0.0
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                392   0.0
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                246   2e-75
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                231   5e-63
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   169   6e-58
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                219   5e-55
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                215   7e-54
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   172   3e-51
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   172   3e-51
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                188   9e-46