Dictyostelium discoideum cDNA Contig-U15818-1

Assembled

Chromosomal Location of Contig-U15818-1

Sequence Contig-U15818-1

ATAATTTGTT TTAATGTAAT TTTTAAGCAA ACTAAAATTG TAAAATAGAA
AATATAATAA AATAGAAAAT AGAAAATAGA AAATAAAATA AAATAAAATA
AAATAAAATA AAATAAAATA AAATAAAATA AAATAAAATA AAATAAAATA
AAAAGTTTGT TTTAGTCCAC ATCAAAAGTT TGGTTTAAAA ATAAATTCAA
AATAAATAGA AAAAATCTAT GAATTCGAAC AGTATTTTTT ATAATACCAA
ATAATAATAA TATTATAATA TTATAATAAT AACTATATTT AGAACAAAAA
AAAAA----- -----ATTAT TTTAATTTTA ATTTTAATTT ATAATTATAA
TTATAATTAT TAAAACTCTT ATTTGGTTCT TCAAACAAAT TACCTTTTTT
TAAATAAATT ATTATTATAA AAATATTAAT AATTTTTTAT TTAAAATCTA
TTATTTTTTT TTAACCATGG TCCATCAGGC ACAACATCAC TACTACCAAC
AACAACAACA ACAACAAACA CAACAACAAC TAAAAATATT AAATAAAAAA
ATCAAAGAGA ATATAAGTGG GAAAAATAAA AATAAGAATT TAGATAATAA
TAATAATAAT AATAATATTA ATAATACAAC CACAACTACA AGTAATAATA
ATAATAGTAA TAAAAATACA TCGAATAGTA AAAATAGTCA TTTAAGTGAA
AAGAGTAGTA ATAGTAATAG TATTCCACAA ATTCAATCTC AAGATAGCAG
AATATTTAAT ACATTTACAA AAAATCATTT AAATAATTTA ATAAATAATC
AACACAATAA TAATTGCTAT AATAATATAA CAGCAGGTCA TTATCAACAA
CAACAACAAC AACAACCACC TCATCATCAT CCAGTTTCAA TAATTAAAAA
AGAATCGTCA TTATCATCAT TACCAGTATC ATCGAATACA GGAGGGGGAG
GATTTGAATC AACAAATAAC AATAATAATA ATAATAATTC AGTTAGAAGA
AAAACAGTAA CAATAGTTGA TAATAGAGAT ATAATCATTG ATAATTTAAC
ACCAATTACA CCAATACCAC CAATACCATC AACATTACCA TCAACATTAC
CAACAAGTTT AATTAGTCAA AGAAAAATGA ACAATAATAA TAATTTAGAG
GATGAAGAAG AGAACAACAT TAATAATGTT GAAAATGTTA TAAAATCAAA
ATTAGATGAA GATAGTTACG AGGAGGAAGA GGAGGAAGAG GATGAAGAAG
AGGACTCATC ATCATCATCA TCATCATCAG ATTCAGATTC AGACTCAGAT
TCAGATTCAG ATTCATTTGA TTTATCATGT GTTCAAATTC AAAATGAAGA
TTCAGCAGAA GTAAAGAATT TGAAGATGAA ATTGTTGAAA GAGAAATCAA
GAGTGTTGGA TACCAAAGAG ACAGTCAATA GTCTAGTTGA GCAAATCACA
GTCTATAAAC AGACTGTTGA AGAGGAAAGA CAAATTTTAG AAGCACAATT
AAAACAAGAG AAAAACACTA AACTGGAATT ATTTGAAATC TATAAAGAGA
CAGAAGCCGA GAAAGAGAAT CTCACCAAAC AATTGGAGAT TGTAATATTG
GAATGTGAGC AATTGGACAA AGAGAAACAA ACCATCTCCA AAGAAAACAT
AAACAATTTA CAAACTCTAA TGAACGAAAT CACTCATATC GAAGAATCAA
ATTCACTCTT GGAGAAAGAA TTGGAAAAAG AGAGACAACT TCACCAAAAA
ACTCAATTAA ATTTAAATGA ACAAATTTTA TTAAATCAAA AATTAGAATC
TTATAATACT GAAATTTCAA ATATTACAAA CAACAACAAC AATAGTACTG
GTAGTAGTGG TGGTAATACC ACCACTACTG GATCTGCAGC AGATCAAGTA
TTAATTGTAC AATTGAAAAA ACAATTATCA GATACACAAC AACAATTGAA
TCAAGAGAAA GAGAGATTAC AAAATTTGGA TAATCTTTTA TTCCAAGGTA
GAAAGATAAT TGGATTCGCT GAAAAGAATG GTGGACAGTT GGATCAGAAT
GCAATGTTTG AAATCAACTC TTTGAAGGGC TCTGTCACTG ATGAAAAGAA
TAATCATCAT AAGACATCGA TGTTATTGGA AGAGGAGAGA AAGAAATCAG
AATTGAATAA GAAAACAGCC GATAATTTAG TTGCAAGAAT GAAAGAATTA
ATCTCTTCAC ATCATGAAAC TTTATCATTA TTAGATGATG AAAAAGAGAA
TTCAAAATTA TTACAACAAG AATTACAAGC ATTAAAAGAA TTATTAACTT
CAAAACAACA GCAACAACAA CAACAACAAA CAAGTGGTAA TGTTGGAGGT
ACAGCAACTG TATCAAATTC AAATACTCAA ACGATTTCAC AACAAACTCC
AGCTGCTTCA ACTTCTGAAG TTTCTTCACC AATTGTGCAG GGTGGTAATA
CAACTACAAA TACAACCAAT AATAATAATA GTAATAATAA TAATGCTATT
TCAGTACCAT CATCACCAGA ATATGAAGAA GGTAAATTAA AACCAGATCC
ATCAGTTGAA TCAATTTCTT CACAAGGTAG TGATGCATCT TCAACAAATA
CTACTACTAC TACTACAACT ACAACTACTA AATCAAATAA TCAAAGAATG
TATAAAACAA TTCGTATGAA AAAGAATGGT GGTATGAAAA TGGGTGGTGA
TATAATGTTA AATTATATGG GTGGTAATAA TGGTAATAAT AATGATAGAT
TAGCAGCAAC AATGACAACA ACAACAACAA CAACACCAGA GAGTTCTTTA
GAATTATTAC CAAATACAAC AGAGCAAGCA TCATCAACAA ATTCATTAAC
TGCAATGAAT ATTCAAACAA ATGCACATTC AACTCATGGT AATACTTTTG
GTGCATCATT TAATCGTTCA ACAAGTAGTC AAGATATTAT TGTTAGTGGT
ACTGCAACCA CTTCAAAATC ATCAATGGCA AAATTGGGTG CAAACTTTTT
CCTTACACCT GATCAACAAC ATGCTTTAGC TTCAACTTCA AATTTATCAT
CATCAACTAA TAATAACTCT GCCACTGCTA CTACCACTGC TACTACCACC
ACCACCACCA CTGGTGGTAA TAAAGATAAT ATTAATGATA TTATGCAATT
CCCATCAACA CCTGTATATC TTACAAATTC ACCAAAAACA TTGGAAAGAA
AGAATACAAG TTCAAAATCA TTAACTAAAA TCGATAAAGA AAATAAAGAA
CGTGAAAAGA GATTAGAGAA AGAAAAGAAA GAAATGACTA AAAAGAATGA
AAAATATTTA AAGAAATTAG AAAAAATTGA AAAAGCTGAA CAAGAGAAAA
AAGCTGATCA AGAAAAGAAA TTAAAAGAAA AAGAAAAAGA AAAAGAAAAA
GAACAACCAC CACCAACAAA TAATGTATCC GTTAAAAAAG AAAAGGAAAA
AGAAAAAGAA AAGGAAAAAG AAAAAGAAAA AGAAAAAGAA AAAGAAAAAG
AAAAAGAAAA TAATTTAAAT TCAAGTGTAA ATAATAATAA TAATAATAAT
AATAATACCA CACCAACTAA AGGTTTGGTT GATTCAACAT CATCATCATC
AAATAATTCA AGTAATCCTA GTAGTTTAAG TAATAGTCAG GAAGGTTCAA
ATTTACAATC TTCAAAGTCA AATCCAAACT TTAAAGAAAG TGACACACAA
TTACCAACTT CATCATCACC ACCACATCTT TCTCATATTG TCGACAATAA
TTCAGTCTCT TCAACTTCAT CTCTTTCATC TTCAAATTCA ACAAATTCAA
CTCGATCACC ATCATTATCT AGTCAAAAAG ATAAAGAAAC AATTAATAAG
AGAAAATCCT TATTTTTTGG AAAATCATAA ATACATAGAT AGATATTAAT
CAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA

Translated Amino Acid Sequence Contig-U15818-1

nlf*cnf*an*nckieniik*kienrk*nkik*nkik*nkik*nkik*nkkfvlvhiksl
v*k*iqnk*kksmnsnsifyntk***YYNIIIITIFRTKKK---

---IILILILIYNYNYNY*nsylvlqtnylflnklll*ky**ffi*nllfffnhgpsgtt
sllpttttttnttttknik*knqreykwek*k*efr*******y**ynhnyk*******k
yie**k*sfk*ke*****ystnsisr*qni*yiykksfk*fnk*stq**ll**ynsrsls
ttttttttsssssfnn*kriviiiitsiieyrrgri*ink*q*****fs*kknsnns***
rynh**fntnytnttntinitinitnkfn*skkneq***frg*rreqh**c*kcykikir
*r*lrggrggrg*rrgliiiiiiirfrfrlrfrfrfi*fimcsnsk*rfsrskefedeiv
ereiksvgyqrdsq*ss*anhsl*tdc*rgktnfrstiktrekh*tgii*nl*rdrsrer
eshqtigdcnigm*aigqretnhlqrkhkqftnsnernhsyrrikftlgerigkrettsp
knsikfk*tnfikskiril*y*nfkyykqqqq*yw**ww*yhhywicsrssinctiekti
irytttiesrereitkfg*sfipr*kdnwir*kewwtvgsecnv*nqlfeglch**ke*s
s*didvigrgekeirie*ensr*fscknerinlfts*nfiiir**krefkiittritsik
riinfkttatttttnkw*cwrysncikfkysndfttnsscfnf*sfftncagw*ynykyn
q********cyfstiitri*rr*iktrsis*infftr**cifnkyyyyyynyny*ik*sk
nv*nnsyekewwyengw*ynvklygw**w*****issnndnnnnnntreffriitkynra
siinkfincneysnkctfnsw*yfwcii*sfnk*sryyc*wycnhfkiingkigcklfpy
t*sttcfsfnfkfiiin***lchcyyhcyyhhhhhww**r*y**yyaipintcisykftk
nigkkeykfkiin*nr*rk*rt*keirerkernd*ke*kifkeirkn*ks*treks*srk
eikrkrkrkrkrttttnk*cir*krkgkrkrkgkrkrkrkrkrkrkrk*fkfkck*****
***yhtn*rfg*fniiiik*fk*s**fk**sgrfkftifkvkskl*rk*htitnfiittt
sfsycrq*fslfnfisfifkfnkfnsitiii*skr*rnn**ekilifwkiint*idinqk
kkkkkkkkk

Homology Contig-U15818-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U15818-1 (Contig-U15818-1Q) /CSM_Contig/Conti...  1949  0.0
Contig-U16198-1 (Contig-U16198-1Q) /CSM_Contig/Conti...   511  e-144
Contig-U12013-1 (Contig-U12013-1Q) /CSM_Contig/Conti...    56  4e-07
Contig-U09807-1 (Contig-U09807-1Q) /CSM_Contig/Conti...    56  4e-07
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    54  2e-06
Contig-U06697-1 (Contig-U06697-1Q) /CSM_Contig/Conti...    54  2e-06
Contig-U15015-1 (Contig-U15015-1Q) /CSM_Contig/Conti...    50  3e-05
Contig-U15640-1 (Contig-U15640-1Q) /CSM_Contig/Conti...    48  1e-04
Contig-U15319-1 (Contig-U15319-1Q) /CSM_Contig/Conti...    48  1e-04
Contig-U04099-1 (Contig-U04099-1Q) /CSM_Contig/Conti...    48  1e-04

Homology Contig-U15818-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ407605) Dictyostelium discoideum cDNA clone:dds43h02, 3' ...   567   0.0    6
(BJ383006) Dictyostelium discoideum cDNA clone:ddc46f15, 3' ...   567   0.0    5
(BJ348847) Dictyostelium discoideum cDNA clone:dda34f18, 3' ...   567   0.0    5
(BJ345050) Dictyostelium discoideum cDNA clone:dda21n09, 3' ...   922   0.0    3
(BJ327700) Dictyostelium discoideum cDNA clone:dda21n09, 5' ...   799   0.0    3
(AU061460) Dictyostelium discoideum slug cDNA, clone SLE340.      392   0.0    4
(BJ348565) Dictyostelium discoideum cDNA clone:dda33k14, 3' ...   567   0.0    3
(BJ405111) Dictyostelium discoideum cDNA clone:dds30k17, 3' ...   567   0.0    3
(BJ408585) Dictyostelium discoideum cDNA clone:dds46f09, 3' ...   567   0.0    3
(BJ384779) Dictyostelium discoideum cDNA clone:ddc50n13, 3' ...   555   0.0    3

Homology Contig-U15818-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AL844503_62(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    54   3e-05
(Q58718) RecName: Full=DNA double-strand break repair rad50 ATPa...    49   0.001
CP000393_765(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    49   0.001
AE014186_259(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    49   0.002
AE014187_572(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    48   0.003
AB092419_1(AB092419|pid:none) Branchiostoma belcheri Amphi-MHC2 ...    47   0.004
CP001146_1446(CP001146|pid:none) Dictyoglomus thermophilum H-6-1...    47   0.004
AC116957_105(AC116957|pid:none) Dictyostelium discoideum chromos...    47   0.004
CP001344_3460(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    47   0.007
BC060254_1(BC060254|pid:none) Mus musculus golgi autoantigen, go...    46   0.010