Homology Contig-U15762-1 vs Protein
Query= Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Contig-U15762-1Q.Seq.d
(2620 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 120 3e-25
AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 120 3e-25
CP000931_3992(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 119 6e-25
CP000563_4021(CP000563|pid:none) Shewanella baltica OS155, compl... 119 7e-25
CP000444_272(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 118 1e-24
CP000503_3778(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 117 3e-24
CP000606_230(CP000606|pid:none) Shewanella loihica PV-4, complet... 107 2e-21
CP000472_2031(CP000472|pid:none) Shewanella piezotolerans WP3, c... 106 5e-21
CP000821_4211(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 105 6e-21
AM743169_628(AM743169|pid:none) Stenotrophomonas maltophilia K27... 100 2e-19
CP000507_3341(CP000507|pid:none) Shewanella amazonensis SB2B, co... 100 3e-19
CP000388_1423(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 99 6e-19
AM920689_3757(AM920689|pid:none) Xanthomonas campestris pv. camp... 99 1e-18
AM039952_3694(AM039952|pid:none) Xanthomonas campestris pv. vesi... 98 1e-18
CP000020_1273(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 66 6e-09
CP000500_518(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 65 1e-08
FM178379_1537(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 65 1e-08
FM992694_176(FM992694|pid:none) Candida dubliniensis CD36 chromo... 64 3e-08
AE016819_308(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 64 4e-08
AE017349_226(AE017349|pid:none) Cryptococcus neoformans var. neo... 63 6e-08
AP007150_43(AP007150|pid:none) Aspergillus oryzae RIB40 genomic ... 62 1e-07
AY557884_1(AY557884|pid:none) Saccharomyces cerevisiae clone FLH... 61 2e-07
(P42946) RecName: Full=Pheromone-regulated membrane protein 10; ... 60 5e-07
AM920428_1542(AM920428|pid:none) Penicillium chrysogenum Wiscons... 58 2e-06
CR382135_142(CR382135|pid:none) Debaryomyces hansenii strain CBS... 57 4e-06
AP006852_180(AP006852|pid:none) Candida albicans genomic DNA, ch... 57 4e-06
CU928169_653(CU928169|pid:none) Kluyveromyces thermotolerans str... 56 6e-06
(O14267) RecName: Full=Uncharacterized protein C7D4.12c; &CU329... 56 8e-06
FN392319_35(FN392319|pid:none) Pichia pastoris GS115 chromosome ... 54 2e-05
AP007161_630(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 52 8e-05
CP000480_3706(CP000480|pid:none) Mycobacterium smegmatis str. MC... 52 1e-04
AP007171_148(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 52 1e-04
CP000099_2594(CP000099|pid:none) Methanosarcina barkeri str. Fus... 51 2e-04
BA000038_1066(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch... 48 0.002
AE016796_487(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 48 0.002
AM920427_1453(AM920427|pid:none) Penicillium chrysogenum Wiscons... 47 0.004
AE000666_744(AE000666|pid:none) Methanothermobacter thermautotro... 45 0.010
AE014186_270(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.039
CP001618_3458(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 43 0.051
CP000817_832(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 42 0.088
AL031745_55(AL031745|pid:none) Plasmodium falciparum DNA from MA... 42 0.11
AE017198_1655(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 42 0.11
CP000283_2532(CP000283|pid:none) Rhodopseudomonas palustris BisB... 41 0.20
(Q02817) RecName: Full=Mucin-2; Short=MUC-2; AltName: F... 41 0.20
CP000413_1581(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 40 0.33
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740... 39 0.97
(O00910) RecName: Full=Signal transducer and activator of transc... 39 0.97
AC117076_28(AC117076|pid:none) Dictyostelium discoideum chromoso... 30 1.0
AC116305_123(AC116305|pid:none) Dictyostelium discoideum chromos... 39 1.3
A43932(A49963;A45106;B45106;A43932;B33532;A61257;PQ0328;)mucin 2... 39 1.3
(Q54DF2) RecName: Full=Probable serine/threonine-protein kinase ... 38 2.2
CP000250_2917(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 38 2.2
M22405_1(M22405|pid:none) Human intestinal mucin mRNA, partial c... 38 2.2
AC115588_5(AC115588|pid:none) Dictyostelium discoideum chromosom... 37 3.7
AE014187_81(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 37 4.8
FN357911_3(FN357911|pid:none) Schistosoma mansoni genome sequenc... 37 4.8
AC117081_1(AC117081|pid:none) Dictyostelium discoideum chromosom... 37 4.8
CP000510_2257(CP000510|pid:none) Psychromonas ingrahamii 37, com... 37 4.8
B46629(B46629) mucin 6, gastric (3-repeat clone) - human (fragme... 37 4.8
CR936503_312(CR936503|pid:none) Lactobacillus sakei strain 23K c... 37 4.8
AE014188_88(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 29 5.7
AC117072_19(AC117072|pid:none) Dictyostelium discoideum chromoso... 33 5.9
AE014187_372(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 6.3
(Q54US7) RecName: Full=GATA zinc finger domain-containing protei... 33 8.0
CP000932_117(CP000932|pid:none) Campylobacter lari RM2100, compl... 36 8.2
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 36 8.2
AC116986_10(AC116986|pid:none) Dictyostelium discoideum chromoso... 36 8.2
AY260053_1(AY260053|pid:none) Drosophila simulans Hmr (Hmr) gene... 36 8.2
>CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H,
complete genome.
Length = 408
Score = 120 bits (301), Expect = 3e-25
Identities = 74/292 (25%), Positives = 141/292 (48%), Gaps = 1/292 (0%)
Frame = +2
Query: 1439 YTHFLRINSTDYNMERMVRLERLADKVIYGEVSCVEALEKLRKILAKKPLYNIYLTTFSY 1618
Y H +R++ D ++ + R++ L D++I G+ + EA+E+L ++ K Y L+ ++
Sbjct: 68 YNHLVRVSPGDIDLGSLARIDELVDELIDGQRTLEEAIERLAEVKNKPAPYGTLLSFLAF 127
Query: 1619 IMSSFTIAFFFDVGWVEVGACSIIGFYXXXXXXXXXXXXXXGRVLEALSSCGGAIIASLF 1798
SS A W +V +I+G+ +LE +++ +++AS
Sbjct: 128 GASSGAFAMLMHTSWHDVFWSTILGWVTFAFVLWSERSRRMSDLLEPMAALTASLLASAI 187
Query: 1799 NCYISPIPIFTVXXXXXXXXXXXXXXXXAVAEISTRNLVSGTSRLVGVFSCLLQLTFGIA 1978
+ I I V ++E++ R+L+SGT+R++ L +L FG
Sbjct: 188 SMIDPSINIPMVILSSIIVFIPGLSLTVGLSELAARHLMSGTARIMDSIMVLFKLYFGAV 247
Query: 1979 LGTKFSEVVMPVRDEVLPVTFPDWVMFIVIPFAAITFGVQLKVHWREFWVIIIASYIGVT 2158
LG ++ + P T P W ++ + +++ + KV ++ +IA YI
Sbjct: 248 LGMALGNLMWGTAIFLPPETMPVWTSWLAVTTLSVSLVILFKVRLKDAPWGMIAGYIAFG 307
Query: 2159 VGNWGSKYFG-DVGAFFGSAAICALGNLYSRLTNISAVVPIMAGIILLVPGS 2311
V W ++Y G +GAF G+ A+ NL+SRL N+ + + + G+++LVPGS
Sbjct: 308 VSIWATEYLGVALGAFVGAFALGLYSNLFSRLMNLPSSIVRLLGLVVLVPGS 359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,364,252,558
Number of extensions: 62457844
Number of successful extensions: 185820
Number of sequences better than 10.0: 69
Number of HSP's gapped: 184753
Number of HSP's successfully gapped: 74
Length of query: 873
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 735
Effective length of database: 604,535,722
Effective search space: 444333755670
Effective search space used: 444333755670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home