Dictyostelium discoideum cDNA Contig-U15762-1

Assembled

Chromosomal Location of Contig-U15762-1

Sequence Contig-U15762-1

AATTCAATCC AACATAAATG TAATAATAGT TTCATTTTTA GTCAGGATAC
CACTGCATTT AAAAAATAAT ATTGAAATAA AAATAAAAAT AAAAATAAAA
AAAATAAAAG ATCTATCCAT GTTTGGCTAT AATTATATAT TTATATAATA
TAAAAATAAA TAAAAAATAA AAATAAATAA ATAATAATAA TAACTATAAT
AACAGTAATA ATAAAATGTA TAATTTTTTT GATAGAATCA AAGCGCCTCT
ATCGGAATAT AAAAGGTATG CAGCGAATCA TAAGAAAGAT GATGATTTTA
CAGATATTGA GGATAAAATA AATTGTGGAC AATTTCCGAA TGAATATGGT
AGTAATGCAA TCGAGTTACC AAATTCACCT ACATATAATA ATAATAATAA
TAATAATAAT GGTTCACCAA ACGTTTTAAA ACAATCTCAA TATATAAGTT
TTATAAATCC ATTATCATTA CCATCATCAT TGATACCACC ACCACCAAAT
TATACATCAC AACAAAATCT AAGTGATGTA ATGAGTAATA ATGGTGGTGG
TAGTGGTGTT GGTGTTAGTA GTAGTAATAA TAATTTAAAT TTAAGAAATA
CGACAGTATC AATGACATCA CCTAGAAATG TACCAATAGT TACATCACCT
CGAAATATTA CAATCTCACC TACTGCAAAT ATAATTTCTG TACCTGCTGA
AATTTCACAA TGTAATAATG TACCGAATTC AATTGGTTCA CCACCAATTG
AAGTTGAGCA ATCACATTTA GTACCAAATA GCGAATTAAA TAACAATAAC
AATAATAATA ATAATAATAA TGAAAATGTT GGTGAAGAAG ATTTTCAATC
ATTAATGGAT CAATCGAATA AATTACAAAT TCAAATGCAA ATGTTAATGC
AAAAAATGCA ACAAATGCAA CAATTGAAAC AACAATTAAA TTTAAAACAT
TCATCAGCCA CTAATATATA TGTACCACCA AGACAAGTTA GAGTGTCTGG
TCAAAAACCA CCAATTAGAC AAAGACAATT TCAAATGAGA CCTCCACAAC
AATCTCAACA ACAATTTTTC GATTTACCAA TTCAAGAGCA TGAACATGAT
ATACCCCATT CAAAAAGACA AGAATTTGAA GATTCATTAA GAAACACTAC
AACTGCAACA ACAAATTTTA ATGAAATTGA AATGCAAAAT TTAAACCAAA
CTTCAAGCAG ATTTGGTAAT AGTAATACAT TTTATAACCC AAATTTTGTG
AACCATAGTA GTGGCAGTTT AGATGAGTCA ACCATAAATG TTGATTCACA
ATATCAACAA CATGAAAAAG ATAAAGATAA TTCAAGTCAA TTATCAAAAA
CTACAATGAC CACATTACCA ATAGTTTCTC C--------- -CTGGTATTT
TCTTTTCATT TGGTTCACCT CATTCAATTC TTTCACCATA TACTCATTTC
CTTAGAATCA ATTCCACCGA TTACAATATG GAACGTATGG TTAGATTGGA
GAGATTGGCC GATAAGGTTA TCTATGGTGA AGTTAGTTGT GTTGAAGCAT
TGGAGAAGTT AAGAAAGATT CTAGCAAAGA AGCCATTGTA CAATATCTAT
CTCACAACTT TTAGTTATAT AATGTCATCA TTCACCATTG CCTTCTTTTT
CGATGTTGGC TGGGTCGAGG TTGGAGCTTG TTCAATCATT GGATTCTATG
TTGGCCTTTT ATGTCTACTC TCGAGTAAAG TGTCTTTGGT TGGCAGAGTT
TTGGAGGCCT TGTCATCTTG TGGTGGAGCA ATCATTGCAT CGTTGTTCAA
TTGCTACATT TCGCCTATCC CCATATTTAC AGTGACCCTG GGCGGCATCA
TATCGTTGTT GCCTGGTTTA GGCTTGACAT TGGCCGTAGC GGAGATTTCA
ACTAGAAATC TGGTTAGTGG CACCTCAAGA TTGGTTGGTG TTTTCTCTTG
TTTATTGCAA TTAACTTTTG GTATTGCGTT GGGTACGAAA TTCTCAGAGG
TAGTCATGCC AGTAAGAGAC GAAGTTTTAC CTGTAACTTT CCCTGATTGG
GTAATGTTTA TTGTAATTCC GTTCGCTGCC ATTACATTTG GTGTTCAATT
AAAAGTTCAT TGGAGAGAAT TTTGGGTTAT CATCATCGCT AGTTACATTG
GTGTAACCGT TGGTAATTGG GGTAGTAAAT ATTTTGGTGA TGTTGGTGCT
TTCTTTGGTT CAGCTGCAAT TTGTGCTCTA GGTAACCTTT ACTCAAGATT
AACAAATATT TCTGCGGTCG TTCCAATTAT GGCGGGTATT ATTTTACTGG
TTCCTGGTAG TATGGGTGTT AAAGGTATCG TTTCAATCAG TGATGGTGAT
ATTTCCGGAG GAATTGATTT CATTGGTGGT ATGTTTATGA CTGCTGCAAG
TTTAACAATG GGTTTATTGG TTGCAAATTT AATTATTGCT CCTCCAAAAT
CGTTCTAAAA AAAATAATAA AAAAAAAAAA ATCTCTAACA TTTTAAAATT
TATTCAATTA TTTGTTTTAA ATTTAATTTA ATTATTGCTT CTCCAAAAAT
CATTCTTAAA AAAAAAAAAA ATAATAATAA TAAAAAAAGA ATAAAAATAA
TTTTCTTATC TGCAAAACAA

Translated Amino Acid Sequence Contig-U15762-1

fnpt*m***fhf*sgyhci*kiilk*k*k*k*kk*kiypclaiiiylynikinkk*k*IN
NNNNYNNSNNKMYNFFDRIKAPLSEYKRYAANHKKDDDFTDIEDKINCGQFPNEYGSNAI
ELPNSPTYNNNNNNNNGSPNVLKQSQYISFINPLSLPSSLIPPPPNYTSQQNLSDVMSNN
GGGSGVGVSSSNNNLNLRNTTVSMTSPRNVPIVTSPRNITISPTANIISVPAEISQCNNV
PNSIGSPPIEVEQSHLVPNSELNNNNNNNNNNNENVGEEDFQSLMDQSNKLQIQMQMLMQ
KMQQMQQLKQQLNLKHSSATNIYVPPRQVRVSGQKPPIRQRQFQMRPPQQSQQQFFDLPI
QEHEHDIPHSKRQEFEDSLRNTTTATTNFNEIEMQNLNQTSSRFGNSNTFYNPNFVNHSS
GSLDESTINVDSQYQQHEKDKDNSSQLSKTTMTTLPIVS---

---GIFFSFGSPHSILSPYTHFLRINSTDYNMERMVRLERLADKVIYGEVSCVEALEKLR
KILAKKPLYNIYLTTFSYIMSSFTIAFFFDVGWVEVGACSIIGFYVGLLCLLSSKVSLVG
RVLEALSSCGGAIIASLFNCYISPIPIFTVTLGGIISLLPGLGLTLAVAEISTRNLVSGT
SRLVGVFSCLLQLTFGIALGTKFSEVVMPVRDEVLPVTFPDWVMFIVIPFAAITFGVQLK
VHWREFWVIIIASYIGVTVGNWGSKYFGDVGAFFGSAAICALGNLYSRLTNISAVVPIMA
GIILLVPGSMGVKGIVSISDGDISGGIDFIGGMFMTAASLTMGLLVANLIIAPPKSF*kk
**kkknl*hfkiysiicfkfnliiaspkiilkkkknnnnkkrikiiflsakq

Homology Contig-U15762-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Conti...  2930  0.0
Contig-U15344-1 (Contig-U15344-1Q) /CSM_Contig/Conti...   529  e-150
Contig-U13557-1 (Contig-U13557-1Q) /CSM_Contig/Conti...   519  e-147
Contig-U15295-1 (Contig-U15295-1Q) /CSM_Contig/Conti...   507  e-143
Contig-U12098-1 (Contig-U12098-1Q) /CSM_Contig/Conti...    78  8e-14
Contig-U08982-1 (Contig-U08982-1Q) /CSM_Contig/Conti...    48  7e-05
Contig-U15677-1 (Contig-U15677-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U15623-1 (Contig-U15623-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti...    42  0.004

Homology Contig-U15762-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ407614) Dictyostelium discoideum cDNA clone:dds43i06, 3' ...  1342   0.0    3
(BJ408333) Dictyostelium discoideum cDNA clone:dds45p11, 3' ...  1267   0.0    3
(BJ445250) Dictyostelium discoideum cDNA clone:ddv58m20, 3' ...  1255   0.0    2
(AU034130) Dictyostelium discoideum slug cDNA, clone SLB778.     1221   0.0    1
(BJ407306) Dictyostelium discoideum cDNA clone:dds38k02, 3' ...  1128   0.0    3
(BJ392837) Dictyostelium discoideum cDNA clone:dds29i05, 5' ...   737   0.0    3
(BJ360402) Dictyostelium discoideum cDNA clone:ddc5m24, 5' e...   856   0.0    2
(BJ418783) Dictyostelium discoideum cDNA clone:ddv34b01, 5' ...   523   0.0    5
(C25557) Dictyostelium discoideum slug cDNA, clone SLA296.        846   0.0    3
(AU060864) Dictyostelium discoideum slug cDNA, clone SLB778.      848   0.0    1

Homology Contig-U15762-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H, ...   120   3e-25
AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1, comp...   120   3e-25
CP000931_3992(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...   119   6e-25
CP000563_4021(CP000563|pid:none) Shewanella baltica OS155, compl...   119   7e-25
CP000444_272(CP000444|pid:none) Shewanella sp. MR-7, complete ge...   118   1e-24
CP000503_3778(CP000503|pid:none) Shewanella sp. W3-18-1, complet...   117   3e-24
CP000606_230(CP000606|pid:none) Shewanella loihica PV-4, complet...   107   2e-21
CP000472_2031(CP000472|pid:none) Shewanella piezotolerans WP3, c...   106   5e-21
CP000821_4211(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...   105   6e-21
AM743169_628(AM743169|pid:none) Stenotrophomonas maltophilia K27...   100   2e-19