Dictyostelium discoideum cDNA Contig-U15719-1

Assembled

Chromosomal Location of Contig-U15719-1

Sequence Contig-U15719-1

ATCGCTTCCG ACTTCGGTTC AATAACGAAA AAGATTTTCG CCTTTTACTA
AAATACTTCC GTGAACCGAA GTCATAAAGG CAGCTTTCAT TATTTTTTTG
AATAGGTCTT CCTATTCCAA ATTTAAAAAA TGAATTGGAA AAAAATTACA
ACTATGGGAG TTATGGTACT CGCTTCAGCT ATTGCAGCAG CTTATTCAAG
TGGTAGTGAA ACAATTTTAT GTCCATTAGT GAATCATTGT GAAAAAGTTA
ATGAATGGGT TGAAAATAAT GATGTTCCAT ATGCAAAATT CAATTGTCAT
ATAACAAATA TTGGTAATAC ACCAATTGGT AATGTTGTAA TGAGATTATC
TGGTGATGGT AAAACTAAAG AAGTTTGGGA AATGGAAACA AAAGATAATG
GTCAAACCTA TAATTTCCCT CAATGGAGAC AACAACAACA ATTAGCATTT
AACCAATCTC ATCCATGGGG TTACACTGTT CAAGGTGGTA AAGAATTAAA
TGTTAATTTA TGTGGTGGTG CAACACCATA TACCAATAAT TTACAATCAA
ATCAACAAAC TCAAACTCAA CAAAAATCAT CCGATATTGT TTGTAACCTT
TCAAATAAAT GTACAGTTTC CAACCCAATG AAAAACCGGT GCCCAAGTTA
ATACACAATA TAAATGTTTT ATAACCAATA ATGGTAAAGT TCCAGTATCA
TTCATTGATA TTCGTATAAA TGGTAATAGT GATCTTTACA ATGTCTGGGA
AATTCATAAC ACCAAAATAA TGGTTTATCA TGGGATTTAA CATCTTGGAG
AATTGACAAA CCATTAGAAG CTACCCAATC TCACGAATGG GGTTACATCA
TCGTCGGTGA TAAACCATTA GATATCCAAG TTTGTCAAAA TAGTCCAATC
CCAACTGTCA CTCAATCACC ATCACCAATT TCATCAAATA AACAACAAAA
ATCAATTGTT CAACAAGAAG AAGCTGATGG TTCAAGTTCA ACTACTACTA
CCACAACCAC CACCACCAAT CAAGATCAAG TTGTTTGTAC AGTCTCAAAT
AAATGTACAG TTGAAAAGGA ATGGAAAAAT GGTGAACAAA AGAATAAACA
ATATAGTTGT GAAATCACAA ATAATGGTAA AGGTCCACTC TCACATGTCG
ATATTCGTCT TAGTAATAAC AGTGCTCTTT ACAATGTTTG GGAAGTTTAT
ACTGTAAACA ATGGTCTCTC TTTTGATGTC TCACCATGGA GACTCGATAA
TCCAATTCAA CCAGGTCAAT CTCACTCTTG GGGTTATATC GTCAATGATG
ATGTTGCTTT AGATGTTAAA GTTTGTCAAA TGGGTACAAA CTAGATTAGA
TCTTTTTTTA AAATATCTTA TTATTAAATA AAANATTTT- ---------A
TATTTTTTAA ATTTACTCTC TCCCATTTAT ACAATTCAAT TTAGATTTAG
AGATAGTTAA AAAAAAAAAA AAAATTAGGA TATAATATAA AATTTTCATT
GTATAATAAA AGTTAGTAAA AAAAAAAAAT GGAATCATAT GAAGAAAGAG
TTAGAAATAT TGTAAATCAT TTAACACCAC CAAAAGAGAT TTTAATGAAT
GATTGTTTAT CATCAGAGGA AGAGATTTTA AATATTAATA ATACTTCATC
AACAACTACA AGTACATTAA CATGGAATAA ACAAGAGTTA TCAGAATATT
TAGAAGCAGC ACCAGATCAT ATTAAAGTTG CAAAAAAGAA ATTACAAGAT
ATAGTTAAAG ATCCAATTTT CTTACCAAAA TATAATATGA ACGTTCAACA
ATGGAGAGAA TTAACATTAC AAAGAGCAAT GATCATCGTT AAAGCAGGTG
CTATTTCATT GGCAGAGTTC AATCGTGATC CAATGAAATA TTTAGTTTCA
ATGGAAATGT TAAATTTGGT AGACCCATCG CTATCTGTTA AATTGGGTGT
TCACTTTTCA TTATTTGGTA ATGCAGTTTT AAATTTAGGT ACAGAGAAAC
ATCATATCAA ATATATTAAA GATATTGATA GTTGGAAATT ACCAGGTTGT
TTTGGTATGA CAGAATTGGG TCATGGCTCA AATGTTCAAG GCGTTGAAAC
CACCGCTACC TATGATAAAA CCACCCAAGA ATTCATTATA AATACACCAT
CGGATTCAGC TCAAAAGTTT TGGATTGGTA ATGCCGCATG TCATGGTCAA
GCATGTTCAG TGTTTGCTCA ATTGTATATT GATAATGTAC ACTATGGAGT
ACACGTTTTC GTTGTACCAA TTCGTAATTC CGATGGTACC ATAGCAGAGA
ATGTTAGAAT CATGGATAAT GGTCATAAGT TAGGTTTACA AGGTGTTGAT
AACGGTAGAA TTTGGTTTGA CAATAAACGT ATTCCAAGAG ATAACCTTTT
AAACAAATTT GGTGATGTTG AAGCCGACGG TACCTACGTC TCTTCCATCC
CATCAAAGAG TAAGAGATTC GGTTCAATGG TTGCACCATT GGTTGGTGGT
AGAGTTTTAA TTGCCGCTTC CGCTTTGAAT GTCTCAAAGA TGGCATTGAT
GATTGCAACT CGTTATGCAT ATAGTAGAAA ACAATTTGGT TCAAAAGGTA
ATGAAATTCG TATCATTGAA TATTTAACTC ATCAACGTAG ATTATTCCCA
ATGATTGCCA CCAGTGTAGC TCTTTCATTC GCAGTTGAAA AATTAAAGAA
AATCTATTGT GAACCAAATA AAACCTCACA AAATGTAAAG GATCTCCATG
TTTGGTCCTC TGGTTTGAAG GCTGTAGTTA GTTGGACAAA AACAAACATT
CTTCAATTGA CTAGAGAATG TTGTGGTGGT CAAGGTTTCT CATCATTCAA
TCAAATCGCA TTGTTTAAAT CGGATTTAGA GATCGATATG ACCTATGAAG
GTGATAATCA TGTACTCCTT CAACAAGTTG CTCGTAACCT TTTGGTAGAG
TTACAAAAGG GTCGTTACAC ATTGACCAGT CCAAATCATG ACTCTGCACA
CATTTACGAT TATGATTTCC AAATTCAAAC CTTGAAATGG AGAGAAAGTG
ATTTAGTCTC AACTTTATCC TCAAAGATTA TGTCTCAACT CGATCAAGGT
CTTTCATTAG AACAAGGTTG GAATACCTGT TTAGATACCA TCACCTTATT
GGGTAAAGCT TTCGTTGATC GTATCACTTT AGAGGAATTC CAATCTGGTA
TCAACAATGC TCCTTCCTCT TTAAAACAAG TCTTGGAACT TTGTAGAAAC
TTATTCTTTT CTTGGAAAGT TAATGAAGAT CTTGGTTACT TCCTTTGTAA
TGATGGTCTT GCAACTCCTG CTGCACTTAA AATTCAAGGT TCTATCAATA
AACTTTGTTC TGATATGTTA CCAATTGGTT TAGACCTTGT AAATTCTTTC
AATATCCCCG AACAATTCAT TCATGCCCCA ATCTCAAAAC CAGATTATAT
TCAAGAATTT AGATATGGTT TAAAAAGAGA TTATTAAAAA TAAAATAAAT
TAAAATAAAA AATAAATTAA ATTAAAAAAT AAATTAAAAA ATTAAAAAAA
ATATTAAACC ATAAAAAAAA AAAAAATAAA TAAAAAAACA AATA

Translated Amino Acid Sequence Contig-U15719-1

rfrlrfnnekdfrlllkyfrepks*rqlslff*iglpipnlkneleknynygsygtrfsy
csslfkw**nnfmsisesl*ks**mg*k**csickiqlsynkyw*ytnw*ccneiiw*w*
n*rslgngnkr*wsnl*fpsmettttisi*pissmglhcsrw*rikc*fmwwcntiyq*f
tikstnsnstkiirycl*pfk*mysfqpnekpvpklihninvl*pimvkfqyhslifv*m
viviftmsgkfitpk*wfimgfnilen*qtirsypisrmglhhrr**tirypslsk*snp
nchsititnfik*ttkincstrrs*wfkfnyyyhnhhhqsrssclyslk*mys*kgmekw
*tke*ti*l*nhk*w*rstltcryss***qcslqclgslyckqwslf*cltmetr*snst
rsisllglyrq**ccfrc*slsngykld*iff*NILLLNKXF---

---YFLNLLSPIYTIQFRFRDS*kkkkn*dii*nfhciikvskkkkwnhmkkeleil*ii
*hhqkrf**mivyhqrkrf*iliilhqqlqvh*hginksyqni*kqhqiilklqkrnyki
*lkiqfsyqnii*tfnngen*hykeq*sslkqvlfhwqssiviq*ni*fqwkc*iw*thr
yllnwvftfhylvmqf*i*vqrniisnilkilivgnyqvvlv*qnwvmaqmfkalkpplp
mikppknsl*ihhriqlksfglvmphvmvkhvqcllncilimytmeytfslyqfvipmvp
*qrmleswimvis*vykvlitvefgltinvfqeitf*tnlvmlkptvptslpshqrvrds
vqwlhhwlvvef*lplpl*msqrwh**lqlvmhivennlvqkvmkfvslni*linvdysq
*lppv*lfhsqlkn*rksivnqikphkm*rismfgplv*rl*lvgqkqtffn*lenvvvv
kvshhsikshclnri*rsi*pmkviimysfnkllvtfw*sykrvvth*pvqimtlhtfti
miskfkp*ngekvi*sqlypqrlclnsikvfh*nkvgipv*ipspywvklslivsl*rns
nlvstmllpl*nkswnfvetysflgklmkilvtsfvmmvlqlllhlkfkvlsinfvlicy
qlv*tl*ilsispnnsfmpqsqnqiifknldmv*keiiknkin*nkk*iklknklkn*kk
y*tikkkkinkktn

Homology Contig-U15719-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U15719-1 (Contig-U15719-1Q) /CSM_Contig/Conti...  3883  0.0
Contig-U15722-1 (Contig-U15722-1Q) /CSM_Contig/Conti...   192  3e-48
Contig-U14928-1 (Contig-U14928-1Q) /CSM_Contig/Conti...    52  6e-06
Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Conti...    52  6e-06
Contig-U12293-1 (Contig-U12293-1Q) /CSM_Contig/Conti...    48  1e-04
Contig-U13460-1 (Contig-U13460-1Q) /CSM_Contig/Conti...    42  0.006
Contig-U11845-1 (Contig-U11845-1Q) /CSM_Contig/Conti...    42  0.006
Contig-U11698-1 (Contig-U11698-1Q) /CSM_Contig/Conti...    42  0.006
Contig-U03798-1 (Contig-U03798-1Q) /CSM_Contig/Conti...    42  0.006
Contig-U00802-1 (Contig-U00802-1Q) /CSM_Contig/Conti...    42  0.006

Homology Contig-U15719-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ374904) Dictyostelium discoideum cDNA clone:ddc16a20, 3' ...  1475   0.0    1
(BJ398503) Dictyostelium discoideum cDNA clone:dds12n16, 3' ...  1328   0.0    1
(BJ356451) Dictyostelium discoideum cDNA clone:dda60h10, 3' ...  1326   0.0    1
(BJ346264) Dictyostelium discoideum cDNA clone:dda30k11, 3' ...  1324   0.0    1
(BJ344503) Dictyostelium discoideum cDNA clone:dda19e18, 3' ...  1318   0.0    1
(BJ346604) Dictyostelium discoideum cDNA clone:dda24o11, 3' ...  1300   0.0    1
(BJ389781) Dictyostelium discoideum cDNA clone:dds20d05, 5' ...  1269   0.0    1
(BJ429255) Dictyostelium discoideum cDNA clone:ddv2i21, 3' e...  1249   0.0    2
(BJ433572) Dictyostelium discoideum cDNA clone:ddv22e12, 3' ...  1233   0.0    3
(BJ441449) Dictyostelium discoideum cDNA clone:ddv46b19, 3' ...  1195   0.0    1

Homology Contig-U15719-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q9LLH9) RecName: Full=Acyl-coenzyme A oxidase 3, peroxisomal;  ...   423   e-116
AF207994_1(AF207994|pid:none) Arabidopsis thaliana acyl-CoA oxid...   423   e-116
(Q9LMI7) RecName: Full=Putative acyl-coenzyme A oxidase 3.2, per...   409   e-112
EU973313_1(EU973313|pid:none) Zea mays clone 396607 acyl-coenzym...   400   e-109
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...   392   e-107
U66299_1(U66299|pid:none) Phalaenopsis sp. 'True Lady' acyl-CoA ...   387   e-105
U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA ...   387   e-105
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...   386   e-105
AF057043_1(AF057043|pid:none) Arabidopsis thaliana acyl-CoA oxid...   386   e-105
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...   385   e-105