Dictyostelium discoideum cDNA Contig-U15187-1

Assembled

Chromosomal Location of Contig-U15187-1

NO HIT FOUND.

Sequence Contig-U15187-1

AATATTTTTT GTACTACTAT TATTATTAAT TTTTTTTTTT ATTTTAAAAA
AAAGAAACGA TAATAATAAT ATGGATCAAA GAGATAGTAG ATCTCCATCT
CGTTCACCAG GTGACGATAA TAAAAAAGAT ATAGATAGTA AAAATAATGG
TGGTGCTGTA AATAACAACT CAAATGGCAG CAATACTAAT AATGGTAATT
CAGCAACAAA TGCTAACAAT GATATAGTTA TGAAGGATGA AAGTAATAGT
AATAACAATA ATAATAATAA TAGTAATACC AGTAACAATG GTACAAATAG
TAATAATAAT AGTAATAACA ACAATAATAA TAATCGTGAT AATAGTAGAT
CACCTTCACC AAGAGGTAGA AGAGGTGACT CTAAAGAACG TTCAAAGAGT
AGAGATAGAA ACGATAGAGA TAGAGATAGG AGTAGAGATA GAAACGACAG
AGATAGAGAT AGACATGATA GAGATAGAAG TAGAGATAGA TATGATAGAC
ATGACAGAAG CAGAGAAAGA AATAGAAGTA GAACACGTTC AAGATCTGGT
TCAAGAAGAA GAAAGTCTAT CGATTTTAGC TTATTAGCTG AAAGAAGAGT
TTATGTAGGT CGTATCTCAA ATAAAACTAC AAGAGAATCT CTAGAAGATT
CTTTCCTTAA ATTTGGTAAA GTTCTATCGT GTGATGTTAA AAATGGTTAT
GCTTTTGTTG AATTTGATAA TGAAAAGAGT GCAAGAGATG CCATTGAAGA
AATGCACGAT TCAATTGTTG ACGGTGAAAA GATTCTTGTA GAGAAATCAC
ACAGTGGTAA AAAACATCCA GATGAATGTT TCATTTGCAG AGGTCGTGGC
CATTGGGCTC GTAGTTGTCC AAAAGGTGGA AGAGGTAGAG ATGGTAGAGA
TAGAGATTAT AGAGATAATA GAGACAGAGA TAGGGATAGA GAAAGAGAAA
GAGAAGGTCA TTTAAGAAAC AGAACTTGTT TCACATGCAA TGGTGTTGGT
CACATTGCAA AGGATTGTCC AAAATCAAAC AGACGTTACA ATCCATACAA
CAACAATAAC AACAATAACA ATGGTAGAAA TAGAGATAGA AGTTATTCTC
GTTCAAGATC AAGATCACCA AGATACAGAA GCAATGGTGG AAACAGATAT
AGAGATAGAA GTAGAGATAG AAGTAGAGAT AGAAGTGGTG ATAGAAGAGG
TGGAAGTGAC AGAAGAAGTG GTAGAGATAG AAGTACCGAA AGAAGAAGAG
AAAGAAGTAA ATCAAATGAA AGAAGAAGAG AAAGAGAAGG TAACAATAGT
CCACGTTAAA TTGATTTTAC CTTTGATTAC TCTTTATTGA AAAATAAATA
ACAAAAAACC AAAAACAATA ACTCTCCCAA TTTATCTCTT ATCAATTCTC
TCAATCATCT CTCTCTCTTT CAACATAATA AATAATAATA ATAATAATAA
TAATAACCTT TTTTTAATCC ACATTATTTA ATTTTCCTCA TCAATTATTT
TTTATTCCCT ACATTAAAAT ATAAAAATAT AAATAAAATT AAAACAAATA
AATTAATAAA TAAATAAA

Translated Amino Acid Sequence Contig-U15187-1

IFFVLLLLLIFFFILKKRNDNNNMDQRDSRSPSRSPGDDNKKDIDSKNNGGAVNNNSNGS
NTNNGNSATNANNDIVMKDESNSNNNNNNNSNTSNNGTNSNNNSNNNNNNNRDNSRSPSP
RGRRGDSKERSKSRDRNDRDRDRSRDRNDRDRDRHDRDRSRDRYDRHDRSRERNRSRTRS
RSGSRRRKSIDFSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDN
EKSARDAIEEMHDSIVDGEKILVEKSHSGKKHPDECFICRGRGHWARSCPKGGRGRDGRD
RDYRDNRDRDRDREREREGHLRNRTCFTCNGVGHIAKDCPKSNRRYNPYNNNNNNNNGRN
RDRSYSRSRSRSPRYRSNGGNRYRDRSRDRSRDRSGDRRGGSDRRSGRDRSTERRRERSK
SNERRREREGNNSPR*idftfdysllknk*qktknnnspnlslinslnhlslfqhnk***
*****pffnphyliflinyflfptlkykninkiktnklink*

Homology Contig-U15187-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Conti...   700  0.0
Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U13321-1 (Contig-U13321-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U15984-1 (Contig-U15984-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U16351-1 (Contig-U16351-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U14683-1 (Contig-U14683-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U09174-1 (Contig-U09174-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U16295-1 (Contig-U16295-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U16221-1 (Contig-U16221-1Q) /CSM_Contig/Conti...    42  0.003

Homology Contig-U15187-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ430841) Dictyostelium discoideum cDNA clone:ddv9b05, 3' e...   688   0.0    2
(BJ428691) Dictyostelium discoideum cDNA clone:ddv12j22, 3' ...   646   0.0    2
(AU284654) Dictyostelium discoideum gamete cDNA clone:FC-BG0...   353   0.0    4
(BJ429369) Dictyostelium discoideum cDNA clone:ddv3b12, 3' e...   440   0.0    2
(BJ412551) Dictyostelium discoideum cDNA clone:ddv9b05, 5' e...   373   e-137  4
(C90749) Dictyostelium discoideum slug cDNA, clone SSJ105.        373   e-136  6
(BJ410526) Dictyostelium discoideum cDNA clone:ddv12j22, 5' ...   349   e-123  4
(AU265904) Dictyostelium discoideum vegetative cDNA clone:VS...   361   e-122  4
(BJ413169) Dictyostelium discoideum cDNA clone:ddv14o11, 5' ...   373   e-122  3
(AU074563) Dictyostelium discoideum slug cDNA, clone SSL275.      438   e-118  1

Homology Contig-U15187-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AY846357_1(AY846357|pid:none) Bombyx mori lark-PA (lark) mRNA, c...    79   4e-13
(Q94901) RecName: Full=RNA-binding protein lark;  &AE014296_1304...    78   8e-13
BC154222_1(BC154222|pid:none) Danio rerio zgc:85696, mRNA (cDNA ...    74   1e-11
AK060171_1(AK060171|pid:none) Oryza sativa Japonica Group cDNA c...    71   1e-10
EF575728_1(EF575728|pid:none) Oryza sativa (indica cultivar-grou...    71   1e-10
BT087828_1(BT087828|pid:none) Zea mays full-length cDNA clone ZM...    71   1e-10
AC124144_5(AC124144|pid:none) Oryza sativa (japonica cultivar-gr...    70   2e-10
AM468599_1(AM468599|pid:none) Vitis vinifera contig VV78X062299....    70   2e-10
AK176551_1(AK176551|pid:none) Arabidopsis thaliana mRNA, complet...    69   4e-10
BT074492_1(BT074492|pid:none) Osmerus mordax clone omor-eva-520-...    69   5e-10