Dictyostelium discoideum cDNA Contig-U14805-1

Assembled

Chromosomal Location of Contig-U14805-1

Sequence Contig-U14805-1

AAGTTTTACT TTATCAAAAA CAACAAATAT ATAAATAAAT AAAAAAATAA
TTAAATAATA TTTAAATAAA TAAATAAATT AATAATTAAA AAATTAAATA
AATATTTTAA ATAAAAAAAT AAATAATAAT ATAAAAAATA AATATAATGA
CAACAACAAC GTTATTAAGT GAAAGTACTA ATAATTCAAA TAATACAAAT
AATAATACAA ATAATAATAC AAATAATACA ATGAACAACA ACAATAATAA
TAATAATAAT AATACCATTG GTAATAATAA TAATAATAAT CCAGAATATG
ATATATTAAT AAATATACTC ATGTTGGGTG ATGAAGAAGT CGGTAAAGGT
AGTGTTGCTA GAAGATATAC AGAAGGTTAT TTCCCAATAA ATGAAAACTT
ATATAATATA GAAGTTGACC GTAAACATAA AGATATAAAA GATTGGGGTG
ATGGTTTAAT AAAGAGAAAA GATCCAAATA AACCGGTAAT TGGTAGACTT
CAACTTTGGA ATTTTCATAT GCACAAGATT TCTGATATTC CAACCAAACA
ACCAATATCG TGAAACCAAT GGATTCATTC TCTTCTTTGA TGTTACAAAT
AAATCTTCCT TTTTTANCAA TTATCATCTT TGATTGAATT GGTTAGAGCT
AAATGTGCTG ATGAAAATAA TAATTTCAAT TGTCAATCTA ATAGTCGTAA
TAGTACAAAT TATAATCGTC ATAGTGTTGG TAATCATTGT CCAAATAGTC
CCTCAAAAAG GTGAGAAAGA GAATAATACA CATTCATCAA CGGCACCACC
AGCTCCACCT CCTTTACCTC CAATTGTTAT CGTTGGCAAT AAATGTGATG
ATGTAAGCAA CACTGTTGTA GATCCAATAG CCGCTAAAAA ATATTGTGAT
TCACTTTCCA TTCCTTTATT ATTCATATCT GCAAAAACAA ATGAAAATGT
CAATGAAGCT TTCAATATTC TTCAAGGTTT AATAATAAAA CAAATGAAAA
TCAAAGAAAG AGAAAGACAA AAACTTTTAA AACAAAAACA TATTAAAAAA
GATGTAAATT GTAACTTAAT GTAATATAAT AAAAATATAA TAAAAATAAA
TTTTTTGTAG ATAAGATAAA AAAAAA

Translated Amino Acid Sequence Contig-U14805-1

kfyfiknnkyink*knn*iifk*inkliikklnkyfk*knk**ykk*i**qqqry*vkvl
iiqiiqiiiqiiiqiiq*tttiiiiiiiplviiiiiiqnmiy**iyscwvmkksvkvvll
ediqkvisq*mktyii*kltvniki*kigvmv**rekiqinr*lvdfnfgifictrflif
qpnnqyretngfilffdvtnkssffxnyhl*LNWLELNVLMKIIISIVNLIVVIVQIIIV
IVLVIIVQIVPQKGEKENNTHSSTAPPAPPPLPPIVIVGNKCDDVSNTVVDPIAAKKYCD
SLSIPLLFISAKTNENVNEAFNILQGLIIKQMKIKERERQKLLKQKHIKKDVNCNLM*yn
kniikinfl*ir*kk

Homology Contig-U14805-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U14805-1 (Contig-U14805-1Q) /CSM_Contig/Conti...  1320  0.0
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U01418-1 (Contig-U01418-1Q) /CSM_Contig/Conti...    36  0.080
Contig-U14142-1 (Contig-U14142-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12811-1 (Contig-U12811-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12335-1 (Contig-U12335-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12261-1 (Contig-U12261-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12259-1 (Contig-U12259-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12499-1 (Contig-U12499-1Q) /CSM_Contig/Conti...    30  4.9

Homology Contig-U14805-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU267858) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    4
(AU266546) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    4
(AU264568) Dictyostelium discoideum vegetative cDNA clone:VS...   462   0.0    3
(AU268473) Dictyostelium discoideum vegetative cDNA clone:VS...   854   0.0    1
(AU263059) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    3
(AU268610) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    3
(AU269670) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    3
(AU268609) Dictyostelium discoideum vegetative cDNA clone:VS...   466   0.0    4
(AU262252) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    3
(AU268339) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    2

Homology Contig-U14805-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86JP5) RecName: Full=Ras-related protein RabR;  &AC115599_14(A...   242   2e-62
AC115599_21(AC115599|pid:none) Dictyostelium discoideum chromoso...    61   2e-13
AC115599_15(AC115599|pid:none) Dictyostelium discoideum chromoso...    79   2e-13
(Q55EG6) RecName: Full=Ras-related protein RabT1;                      58   2e-10
EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_...    55   6e-06
L12031_1(L12031|pid:none) Leishmania major V121 GTP-binding prot...    54   1e-05
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456...    54   1e-05
AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso...    53   2e-05
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom...    53   2e-05
GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090...    53   2e-05