Homology Contig-U14712-1 vs Protein
Query= Contig-U14712-1 (Contig-U14712-1Q) /CSM_Contig/Contig-U14712-1Q.Seq.d
(573 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromoso... 313 3e-84
AM087211_1(AM087211|pid:none) Ornithorhynchus anatinus partial a... 32 9.3
(A8GW25) RecName: Full=Ribonuclease PH; Short=RNase PH;... 32 9.3
(Q1RIX6) RecName: Full=Ribonuclease PH; Short=RNase PH;... 32 9.3
>AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromosome
2 map 5862124-6045772 strain AX4, complete sequence.
Length = 152
Score = 313 bits (801), Expect = 3e-84
Identities = 149/154 (96%), Positives = 149/154 (96%)
Frame = +2
Query: 56 MTSKYCCQHDEFSLRKLXKSEDFTLYLDELLDQDEFLKIQPGYCTEECKXKMKEIYRITF 235
MTSKYCCQHDEFSLRKL KSEDFTLYLDELLDQDEFLKIQPGYCTEECK KMKEIYRITF
Sbjct: 1 MTSKYCCQHDEFSLRKLKKSEDFTLYLDELLDQDEFLKIQPGYCTEECKQKMKEIYRITF 60
Query: 236 ERYIETINKYYSDSRIFEYNLGKNPRGCDIWMYREFFSTPPPISPQDEYARMVIXAMAMK 415
ERYIETINKYYSDSRIFEYNLGKNPRGCDIWMYREFFSTPPPISPQDEYARMVI AMK
Sbjct: 61 ERYIETINKYYSDSRIFEYNLGKNPRGCDIWMYREFFSTPPPISPQDEYARMVI--KAMK 118
Query: 416 VGIKDGKPVRLCELPPGVQCDFDAKNLPDSEEDE 517
VGIKDGKPVRLCELPPGVQCDFDAKNLPDSEEDE
Sbjct: 119 VGIKDGKPVRLCELPPGVQCDFDAKNLPDSEEDE 152
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 817,085,232
Number of extensions: 15786003
Number of successful extensions: 47517
Number of sequences better than 10.0: 4
Number of HSP's gapped: 47511
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 70
Effective length of database: 659,557,225
Effective search space: 46169005750
Effective search space used: 46169005750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Dictyostelium discoideum cDNA Project Home