Homology Contig-U14712-1 vs Protein

Query= Contig-U14712-1 (Contig-U14712-1Q) /CSM_Contig/Contig-U14712-1Q.Seq.d
         (573 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromoso...   313   3e-84
AM087211_1(AM087211|pid:none) Ornithorhynchus anatinus partial a...    32   9.3
(A8GW25) RecName: Full=Ribonuclease PH;          Short=RNase PH;...    32   9.3
(Q1RIX6) RecName: Full=Ribonuclease PH;          Short=RNase PH;...    32   9.3

>AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromosome
           2 map 5862124-6045772 strain AX4, complete sequence.
          Length = 152

 Score =  313 bits (801), Expect = 3e-84
 Identities = 149/154 (96%), Positives = 149/154 (96%)
 Frame = +2

Query: 56  MTSKYCCQHDEFSLRKLXKSEDFTLYLDELLDQDEFLKIQPGYCTEECKXKMKEIYRITF 235
           MTSKYCCQHDEFSLRKL KSEDFTLYLDELLDQDEFLKIQPGYCTEECK KMKEIYRITF
Sbjct: 1   MTSKYCCQHDEFSLRKLKKSEDFTLYLDELLDQDEFLKIQPGYCTEECKQKMKEIYRITF 60

Query: 236 ERYIETINKYYSDSRIFEYNLGKNPRGCDIWMYREFFSTPPPISPQDEYARMVIXAMAMK 415
           ERYIETINKYYSDSRIFEYNLGKNPRGCDIWMYREFFSTPPPISPQDEYARMVI   AMK
Sbjct: 61  ERYIETINKYYSDSRIFEYNLGKNPRGCDIWMYREFFSTPPPISPQDEYARMVI--KAMK 118

Query: 416 VGIKDGKPVRLCELPPGVQCDFDAKNLPDSEEDE 517
           VGIKDGKPVRLCELPPGVQCDFDAKNLPDSEEDE
Sbjct: 119 VGIKDGKPVRLCELPPGVQCDFDAKNLPDSEEDE 152

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 817,085,232
Number of extensions: 15786003
Number of successful extensions: 47517
Number of sequences better than 10.0: 4
Number of HSP's gapped: 47511
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 70
Effective length of database: 659,557,225
Effective search space: 46169005750
Effective search space used: 46169005750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)




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