Homology Contig-U14712-1 vs DNA
Query= Contig-U14712-1 (Contig-U14712-1Q) /CSM_Contig/Contig-U14712-1Q.Seq.d
(573 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C84104) Dictyostelium discoideum slug cDNA, clone SSC783. 674 0.0 2
(BJ335996) Dictyostelium discoideum cDNA clone:dda52g12, 5' ... 165 e-100 6
(AU071940) Dictyostelium discoideum slug cDNA, clone SSC783. 351 2e-92 1
(AU271222) Dictyostelium discoideum vegetative cDNA clone:VS... 159 2e-91 6
(BJ333150) Dictyostelium discoideum cDNA clone:dda41i18, 5' ... 147 7e-89 5
(BJ350974) Dictyostelium discoideum cDNA clone:dda41i18, 3' ... 143 1e-87 5
(AU271221) Dictyostelium discoideum vegetative cDNA clone:VS... 143 1e-87 5
(BJ354044) Dictyostelium discoideum cDNA clone:dda52g12, 3' ... 143 4e-87 5
(ET843992) CHO_OF442xg22f1.ab1 CHO_OF Nicotiana tabacum geno... 46 0.18 2
(ET844064) CHO_OF442xg22f2.ab1 CHO_OF Nicotiana tabacum geno... 46 0.20 2
(AL953859) Zebrafish DNA sequence from clone DKEY-53P21. 38 0.22 2
(AC162220) Bos taurus clone CH240-111B22, WORKING DRAFT SEQU... 42 0.54 3
(AC145044) Bos taurus clone RP42-23K1, WORKING DRAFT SEQUENC... 42 0.94 4
(AC200430) Pongo abelii BAC clone CH276-43P12 from chromosom... 46 1.5 1
(AC135158) Oryza sativa Japonica Group chromosome 3 clone OJ... 46 1.5 1
(AC105732) Oryza sativa Japonica Group chromosome 3 clone OS... 46 1.5 1
(AB106554) Oryza sativa Japonica Group DROOPING LEAF gene fo... 46 1.5 1
(EA696016) Sequence 74895 from patent US 7365185. 46 1.5 1
(GC700599) Sequence 15844 from patent US 6812339. 46 1.5 1
(AC090409) Homo sapiens chromosome 18, clone RP11-879F14, co... 46 1.5 1
(AC006203) Homo sapiens chromosome 18, clone hRPK.453_M_1, c... 46 1.5 1
(AC090347) Homo sapiens chromosome 18 clone RP11-834F24 map ... 46 1.5 1
(AP001655) Homo sapiens genomic DNA, chromosome 18q21 clone:... 46 1.5 1
(AP001654) Homo sapiens genomic DNA, chromosome 18q21 clone:... 46 1.5 1
(AC177288) Strongylocentrotus purpuratus clone R3-1033F10, W... 46 1.5 1
(AC176207) Strongylocentrotus purpuratus clone R3-3063I13, W... 46 1.5 1
(AC168823) Strongylocentrotus purpuratus clone R3-13E21, WOR... 46 1.5 1
(FI818520) SIR-51M14TF Sisymbrium irio BAC library SIR Sisym... 46 1.5 1
(ET844153) CHO_OF442xi24r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.5 1
(DE373540) Bombyx mori genomic DNA, BAC clone:BET_640_A12. 46 1.5 1
(DE324033) Bombyx mori genomic DNA, BAC clone:BES_635_L16. 46 1.5 1
(DE299778) Bombyx mori genomic DNA, BAC clone:BES_052_N16. 46 1.5 1
(CU177445) Equus caballus GSS, BAC clone CH241-307C21, T7 en... 46 1.5 1
(ES390151) MUS05-B10.x1d-t SHGC-MUS Mytilus californianus cD... 46 1.5 1
(ES388834) MUS05-B10.y1d-s SHGC-MUS Mytilus californianus cD... 46 1.5 1
(ES738499) MytUSCGM5pFLC-I 15m13f2 Mytilus californianus lib... 46 1.5 1
(EH613452) NNEA2048 Nelumbo nucifera embryonic axis cDNA lib... 40 2.5 2
(BX000991) Zebrafish DNA sequence from clone CH211-203L7 in ... 40 4.7 3
(AC193561) Gallus gallus BAC clone TAM32-84L23 from chromoso... 44 6.1 1
(AC156104) Bos taurus clone CH240-44O23, WORKING DRAFT SEQUE... 44 6.1 1
(AC190699) Zea mays chromosome 3 clone ZMMBBb-537K11; ZMMBBb... 44 6.1 1
(AC172358) Bos taurus clone CH240-165G19, WORKING DRAFT SEQU... 44 6.1 1
(FI055923) CHO_OF6603xo18r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 6.1 1
(FI002282) CHO_OF6892xa04r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 6.1 1
(FH555110) CHO_OF4790xe10r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.1 1
(FH436162) CHO_OF4992xh15r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.1 1
(FH339846) CHO_OF4604xj17r2.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.1 1
(FH164826) CHO_OF3082xo13r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.1 1
(ET880731) CHO_OF418xi21f1.ab1 CHO_OF Nicotiana tabacum geno... 44 6.1 1
(EJ120774) 1092343371818 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.1 1
(ED104401) AUAC-aam56b07.b1 Ascaris suum whole genome shotgu... 44 6.1 1
(DU071600) 62544 Tomato HindIII BAC Library Solanum lycopers... 44 6.1 1
(CU293102) Equus caballus GSS, BAC clone CH241-457K24, T7 en... 44 6.1 1
(CR889108) Sus scrofa BES. 44 6.1 1
(CC223676) CH261-123C15_Sp6.1 CH261 Gallus gallus genomic cl... 44 6.1 1
(CA304823) As_adfo_22G08_T3 Ascaris suum adult female ovary ... 44 6.1 1
(BU605864) As_adfg_15C04_T3 Ascaris suum adult female gut As... 44 6.1 1
(BI926346) EST546235 tomato flower, buds 0-3 mm Solanum lyco... 44 6.1 1
(AW651564) EST330006 tomato germinating seedlings, TAMU Sola... 44 6.1 1
(AC132527) Rattus norvegicus clone CH230-182P17, WORKING DRA... 36 9.2 4
>(C84104) Dictyostelium discoideum slug cDNA, clone SSC783.
Length = 555
Score = 674 bits (340), Expect(2) = 0.0
Identities = 346/349 (99%)
Strand = Plus / Plus
Query: 58 gacaagtaaatattgttgccaacatgatgaattttctttaagaaagcttnaaaaaagtga 117
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 36 gacaagtaaatattgttgccaacatgatgaattttctttaagaaagcttcaaaaaagtga 95
Query: 118 agatttcactctttaccttgatgaattactagatcaagatgagtttctaaagattcagcc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 agatttcactctttaccttgatgaattactagatcaagatgagtttctaaagattcagcc 155
Query: 178 tggttactgcacagaggaatgtaaacanaaaatgaaggagatttatagaattacattcga 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 156 tggttactgcacagaggaatgtaaacacaaaatgaaggagatttatagaattacattcga 215
Query: 238 acgttatattgagactataaacaaatattacagtgacagcagaatttttgaatataactt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 acgttatattgagactataaacaaatattacagtgacagcagaatttttgaatataactt 275
Query: 298 gggaaaaaatcctcgaggatgtgatatttggatgtatcgagaatttttcagtactccacc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gggaaaaaatcctcgaggatgtgatatttggatgtatcgagaatttttcagtactccacc 335
Query: 358 ccctatctctccccaagatgaatatgctagaatggtcataanagcaatg 406
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 336 ccctatctctccccaagatgaatatgctagaatggtcataaaagcaatg 384
Score = 303 bits (153), Expect(2) = 0.0
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 407 gcaatgaaagttggtattaaagatggaaagcctgttagattatgtgaattgccacctggt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcaatgaaagttggtattaaagatggaaagcctgttagattatgtgaattgccacctggt 438
Query: 467 gtacaatgtgattttgatgcaaaaaacctacctgattctgaagaagatgaatagaaaaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtacaatgtgattttgatgcaaaaaacctacctgattctgaagaagatgaatagaaaaat 498
Query: 527 aagtgttaattaaataaaaagaactgttttaaa 559
|||||||||||||||||||||||||||||||||
Sbjct: 499 aagtgttaattaaataaaaagaactgttttaaa 531
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 709,118,829
Number of extensions: 42418976
Number of successful extensions: 3468490
Number of sequences better than 10.0: 62
Length of query: 573
Length of database: 106,710,029,556
Length adjustment: 23
Effective length of query: 550
Effective length of database: 104,212,228,590
Effective search space: 57316725724500
Effective search space used: 57316725724500
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home