Dictyostelium discoideum cDNA Contig-U13999-1

Assembled

Chromosomal Location of Contig-U13999-1

Sequence Contig-U13999-1

ATCCCACACA TACAAATATA CACATACATA ATGGCAACAT TACCAAAAAG
AATTATAAAG GAAACACAAA GACTTATGAC TGAACCTGCT CCAGGTATTA
GTGCAACACC AGCAACAGAT AATTTTCGTT ATTTTAAAGT AGCAATTTCA
GGACCATTAG ATTCACCATT TGAAGGTGGT GTTTTTAATT TAGAACTTTT
CCTTACAGAT GACTATCCAA TGTCTGCACC AAAAGTTCGT TTCCTTACTA
AAATCTATCA CCCAAATATT GATAAGTTGG GTAGAATTTG TTTAGATATT
TTAAAAGATA AATGGAGTCC AGCTCTTCAA ATTAGAACTG TTCTCTTATC
AATTCAAGCT TTATTATCAG CCCCAAATCC AGATGATCCA TTAGCAAATG
ATGTAGCTGA ACATTGGAAA ACCAACGAAA AAGAAGCAAT GGCAAGAGCT
AGAGAATGGA CCAGATTATA CGCTGAAGCA CCAGTTGAAA ATTAAACAAA
TCTTGATATA GTATTATTCT TTTTGCGTTT TTAAAATCCT CTTGGAAATT
AATATACAGC TTTTTTTAAA ATTTCAAAAT AGATATTATA ACACCTCCCC
TCAACGATAC AAAAATTACT ACACCTTGTG AATAAACACC ATATAAAATA
TAAAAGAAAA AAAAAAAAAA AATCAACCAA CCAACAAACC GCAATAACCA
TCAACCATCA TCATCACCTC TACCATTTTT TGTAATAAAT AAAAAAAAAA
ACATTTTTTA TTTTTTTTTT TTTTCAATTA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAA

Translated Amino Acid Sequence Contig-U13999-1

IPHIQIYTYIMATLPKRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGG
VFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA
LLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYAEAPVEN*tnldivlfflrf*np
lgn*ytaffkisk*il*hlpstiqkllhlvnkhhikykrkkkkkstnqqtaitinhhhhl
yhfl**ikkktffiffffqlkkkkkkkkkkkkkkkkkk

Homology Contig-U13999-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13999-1 (Contig-U13999-1Q) /CSM_Contig/Conti...  1259  0.0
Contig-U14130-1 (Contig-U14130-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U04058-1 (Contig-U04058-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U02230-1 (Contig-U02230-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U14897-1 (Contig-U14897-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U14674-1 (Contig-U14674-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14466-1 (Contig-U14466-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14426-1 (Contig-U14426-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14014-1 (Contig-U14014-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13894-1 (Contig-U13894-1Q) /CSM_Contig/Conti...    44  2e-04

Homology Contig-U13999-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ330445) Dictyostelium discoideum cDNA clone:dda31h13, 5' ...  1110   0.0    2
(C94354) Dictyostelium discoideum slug cDNA, clone SSK872.        803   0.0    3
(AU263264) Dictyostelium discoideum vegetative cDNA clone:VS...   617   0.0    3
(AU073977) Dictyostelium discoideum slug cDNA, clone SSJ145.      476   e-130  1
(GR587002) CCAB2249.b1 CCAB Dictyostelium purpureum 0 hr sta...   357   5e-94  1
(C90785) Dictyostelium discoideum slug cDNA, clone SSJ145.        135   1e-84  4
(GR586809) CCAB2125.b1 CCAB Dictyostelium purpureum 0 hr sta...   303   6e-78  1
(EH431909) NPE00000505 Neocallimastix patriciarum ZAP II cDN...   178   3e-46  2
(EH214486) USDA-FP_177305 WHMH (pink hibiscus mealybug) Maco...   119   2e-33  4
(EH013033) USDA-FP_185874 Lysiphlebus testaceipes adult whol...   131   3e-33  2

Homology Contig-U13999-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86K32) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   287   3e-76
BT071782_1(BT071782|pid:none) Picea sitchensis clone WS0454_N05 ...   251   3e-65
DQ443216_1(DQ443216|pid:none) Bombyx mori ubiquitin conjugating ...   250   5e-65
EF145757_1(EF145757|pid:none) Populus trichocarpa clone WS0113_D...   249   6e-65
EF145085_1(EF145085|pid:none) Populus trichocarpa clone WS01120_...   249   8e-65
EU284925_1(EU284925|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   249   8e-65
EF082769_1(EF082769|pid:none) Picea sitchensis clone WS0277_E18 ...   247   3e-64
BC044461_1(BC044461|pid:none) Danio rerio ubiquitin-conjugating ...   247   3e-64
(P61088) RecName: Full=Ubiquitin-conjugating enzyme E2 N;       ...   247   4e-64
BT038939_1(BT038939|pid:none) Zea mays full-length cDNA clone ZM...   246   5e-64