Dictyostelium discoideum cDNA Contig-U13973-1

Assembled

Chromosomal Location of Contig-U13973-1

Sequence Contig-U13973-1

ATAAATATTG GATTTATAAA TATCAGCATA TATACGCCCC CATTTTTGTA
TGGTCTATAT TCGATTAAAT ATAGATTATG TGATTATAGT GTTTTCACAG
AGGGTTCAAT TGGAAGGGTT AGAACTGCAA ATGCTTCAAA TTTTGAAATC
ATCTCTTTTA TCATTGGTAA ATTGGTTTTC ATTGTTTTTA GATTCATCAT
ACCATTACAA TATCATAGTT TAGTAAACTT GTTAACTTAT TTCTTTATCG
CTGAATTCTT TTTTGGTCTT TATTTATCCT TTGGTTTCCA AGTTAGTCAT
TCTGCTGATA ATTTAAAAAT TGTTGCAACA AGTGTAAATG AAAATGATGA
ACCAACAAAT GTTGATGAAG ATTGGGCAAT TCATCAAATT AAAACTACTC
AAGATTATGG TATTAATTCA TATATGTGTT TATTTTTTTC GGGTGGTGTA
AATTTACAAG TTGTTCATCA CTTGTTTCCA TCAATTTCAC AAGAATACTA
TGGTGAATTA GTACCAATTA TTAAAAAGGT TTGTGATGAG TATGATGTAC
ATTATAATAT TCAACCAACA TTTTATGCTG CTTTTAAATC TCATATTGAT
TTTCTTTACA ATATGGGTAA TAATGAAAAT TATGTAAGAA AATCTGTAAC
CGACTAGTAA TTGAACCTAA AAATAAAAAA ATAAAAAAAT AAAAAATCCA
ACAAACCCAA AAACAAAACA TAAAAATATC GTTGCAAC

Translated Amino Acid Sequence Contig-U13973-1

INIGFINISIYTPPFLYGLYSIKYRLCDYSVFTEGSIGRVRTANASNFEIISFIIGKLVF
IVFRFIIPLQYHSLVNLLTYFFIAEFFFGLYLSFGFQVSHSADNLKIVATSVNENDEPTN
VDEDWAIHQIKTTQDYGINSYMCLFFSGGVNLQVVHHLFPSISQEYYGELVPIIKKVCDE
YDVHYNIQPTFYAAFKSHIDFLYNMGNNENYVRKSVTD**lnlkikk*knkksnkpknkt
*kyrcn

Homology Contig-U13973-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13973-1 (Contig-U13973-1Q) /CSM_Contig/Conti...  1283  0.0
Contig-U02347-1 (Contig-U02347-1Q) /CSM_Contig/Conti...    68  1e-11
Contig-U14443-1 (Contig-U14443-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U05300-1 (Contig-U05300-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U00893-1 (Contig-U00893-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U13889-1 (Contig-U13889-1Q) /CSM_Contig/Conti...    34  0.20

Homology Contig-U13973-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ343100) Dictyostelium discoideum cDNA clone:dda22d05, 3' ...   856   0.0    2
(BJ377554) Dictyostelium discoideum cDNA clone:ddc24d03, 3' ...   842   0.0    2
(BJ437958) Dictyostelium discoideum cDNA clone:ddv35l24, 3' ...   775   0.0    3
(BJ434957) Dictyostelium discoideum cDNA clone:ddv25e17, 3' ...   373   0.0    4
(BJ402217) Dictyostelium discoideum cDNA clone:dds20j19, 3' ...   283   e-164  3
(BJ373631) Dictyostelium discoideum cDNA clone:ddc3o21, 3' e...    68   1e-17  3
(BJ402178) Dictyostelium discoideum cDNA clone:dds20b19, 3' ...    68   1e-17  3
(BJ398196) Dictyostelium discoideum cDNA clone:dds11m11, 3' ...    68   1e-17  3
(C89911) Dictyostelium discoideum slug cDNA, clone SSG614.         68   1e-17  3
(AB022097) Dictyostelium discoideum FadB mRNA for delta 5 fa...    68   5e-17  3

Homology Contig-U13973-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C...   423   e-121
(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A;        ...   238   2e-63
(O96099) RecName: Full=Delta(5) fatty acid desaturase B;        ...   219   4e-58
(O74212) RecName: Full=Delta(5) fatty acid desaturase;          ...   133   5e-30
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5...   132   1e-29
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a...   126   1e-28
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ...   120   6e-26
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   117   4e-25
CQ831428_1(CQ831428|pid:none) Sequence 9 from Patent WO2004057001.    115   9e-25
CS020137_1(CS020137|pid:none) Sequence 91 from Patent WO20050123...   112   9e-24