Homology Contig-U13973-1 vs DNA
Query= Contig-U13973-1 (Contig-U13973-1Q) /CSM_Contig/Contig-U13973-1Q.Seq.d
(738 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ343100) Dictyostelium discoideum cDNA clone:dda22d05, 3' ... 856 0.0 2
(BJ377554) Dictyostelium discoideum cDNA clone:ddc24d03, 3' ... 842 0.0 2
(BJ437958) Dictyostelium discoideum cDNA clone:ddv35l24, 3' ... 775 0.0 3
(BJ434957) Dictyostelium discoideum cDNA clone:ddv25e17, 3' ... 373 0.0 4
(BJ402217) Dictyostelium discoideum cDNA clone:dds20j19, 3' ... 283 e-164 3
(BJ373631) Dictyostelium discoideum cDNA clone:ddc3o21, 3' e... 68 1e-17 3
(BJ402178) Dictyostelium discoideum cDNA clone:dds20b19, 3' ... 68 1e-17 3
(BJ398196) Dictyostelium discoideum cDNA clone:dds11m11, 3' ... 68 1e-17 3
(C89911) Dictyostelium discoideum slug cDNA, clone SSG614. 68 1e-17 3
(AB022097) Dictyostelium discoideum FadB mRNA for delta 5 fa... 68 5e-17 3
(BJ435833) Dictyostelium discoideum cDNA clone:ddv28h16, 3' ... 70 7e-17 4
(AU262823) Dictyostelium discoideum vegetative cDNA clone:VS... 70 9e-17 4
(BJ428168) Dictyostelium discoideum cDNA clone:ddv11a02, 3' ... 70 1e-16 4
(BJ433837) Dictyostelium discoideum cDNA clone:ddv23g04, 3' ... 70 1e-16 4
(BJ429644) Dictyostelium discoideum cDNA clone:ddv4j08, 3' e... 70 1e-16 4
(BJ435964) Dictyostelium discoideum cDNA clone:ddv29m02, 3' ... 70 1e-16 4
(BJ433617) Dictyostelium discoideum cDNA clone:ddv22m11, 3' ... 70 1e-16 4
(BJ344005) Dictyostelium discoideum cDNA clone:dda17k20, 3' ... 70 1e-16 4
(AU039654) Dictyostelium discoideum slug cDNA, clone SLG121. 70 1e-16 4
(BJ428805) Dictyostelium discoideum cDNA clone:ddv1f07, 3' e... 70 1e-16 4
(BJ435920) Dictyostelium discoideum cDNA clone:ddv28p20, 3' ... 70 1e-16 4
(AU268015) Dictyostelium discoideum vegetative cDNA clone:VS... 70 1e-16 4
(BJ433541) Dictyostelium discoideum cDNA clone:ddv22o04, 3' ... 70 1e-16 4
(BJ428626) Dictyostelium discoideum cDNA clone:ddv12k16, 3' ... 70 1e-16 4
(AU034870) Dictyostelium discoideum slug cDNA, clone SLE621. 70 1e-16 4
(BJ428749) Dictyostelium discoideum cDNA clone:ddv1h05, 3' e... 70 2e-16 4
(BJ399627) Dictyostelium discoideum cDNA clone:dds6c20, 3' e... 70 2e-16 4
(BJ428349) Dictyostelium discoideum cDNA clone:ddv11i18, 3' ... 70 2e-16 4
(BJ429738) Dictyostelium discoideum cDNA clone:ddv4p16, 3' e... 70 2e-16 4
(BJ431124) Dictyostelium discoideum cDNA clone:ddv9o21, 3' e... 70 2e-16 4
(BJ432422) Dictyostelium discoideum cDNA clone:ddv18k15, 3' ... 70 2e-16 4
(BJ430493) Dictyostelium discoideum cDNA clone:ddv7o10, 3' e... 70 2e-16 4
(BJ428736) Dictyostelium discoideum cDNA clone:ddv1e06, 3' e... 70 2e-16 4
(BJ373980) Dictyostelium discoideum cDNA clone:ddc5o14, 3' e... 70 2e-16 4
(BJ436303) Dictyostelium discoideum cDNA clone:ddv30a23, 3' ... 70 2e-16 4
(BJ435453) Dictyostelium discoideum cDNA clone:ddv27m05, 3' ... 70 2e-16 4
(BJ432338) Dictyostelium discoideum cDNA clone:ddv18l11, 3' ... 70 2e-16 4
(BJ428985) Dictyostelium discoideum cDNA clone:ddv1p21, 3' e... 70 2e-16 4
(BJ435057) Dictyostelium discoideum cDNA clone:ddv25m24, 3' ... 70 2e-16 4
(CS204284) Sequence 45 from Patent EP1598422. 70 2e-16 4
(BD092935) Methods and compositions for synthesis of long ch... 70 2e-16 4
(BD082645) Methods and compositions for synthesis of long ch... 70 2e-16 4
(BD082630) Methods and compositions for synthesis of long ch... 70 2e-16 4
(GP432058) Sequence 19 from patent US 7531347. 70 2e-16 4
(C25549) Dictyostelium discoideum slug cDNA, clone SLA256. 70 2e-16 4
(BJ434158) Dictyostelium discoideum cDNA clone:ddv16f01, 3' ... 64 6e-15 4
(BJ400449) Dictyostelium discoideum cDNA clone:dds13h09, 3' ... 68 7e-15 3
(AU264885) Dictyostelium discoideum vegetative cDNA clone:VS... 70 1e-14 3
(AU264884) Dictyostelium discoideum vegetative cDNA clone:VS... 70 1e-14 3
(AU034602) Dictyostelium discoideum slug cDNA, clone SLC603. 70 2e-14 3
(AU265815) Dictyostelium discoideum vegetative cDNA clone:VS... 70 2e-14 3
(AU264268) Dictyostelium discoideum vegetative cDNA clone:VS... 68 6e-14 2
(AU037406) Dictyostelium discoideum slug cDNA, clone SSD596. 68 6e-14 2
(BJ373738) Dictyostelium discoideum cDNA clone:ddc4c23, 3' e... 70 4e-13 3
(AB029311) Dictyostelium discoideum FadA gene for fatty acid... 70 5e-13 4
(AU036916) Dictyostelium discoideum slug cDNA, clone SSB813. 70 2e-11 2
(GR584114) CCAA2173.g1 CCAA Dictyostelium purpureum 0 hr sta... 78 6e-10 1
(GR581545) CBZZ1436.g1 CBZZ Dictyostelium purpureum 18 hr st... 78 6e-10 1
(GR579267) CBZY1938.g1 CBZY Dictyostelium purpureum 18 hr st... 78 6e-10 1
(GR577103) CBXW2181.g3 CBXW Dictyostelium purpureum 6 hr veg... 78 6e-10 1
(GR576399) CBXW1612.g1 CBXW Dictyostelium purpureum 6 hr veg... 78 6e-10 1
(GR571855) CBTG2241.g1 CBTG Dictyostelium purpureum 12 hr ve... 78 6e-10 1
(AU262517) Dictyostelium discoideum vegetative cDNA clone:VS... 38 0.046 2
(EK356568) 1095468560903 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.33 2
(AC156399) Mus musculus 6 BAC RP24-238J9 (Roswell Park Cance... 48 0.50 1
(AC153376) Mus musculus 6 BAC RP23-210L10 (Roswell Park Canc... 48 0.50 1
(DY364254) ZO__Ee0002H03.r ZO__Ee Zingiber officinale cDNA c... 48 0.50 1
(DY364253) ZO__Ee0002H03.f ZO__Ee Zingiber officinale cDNA c... 48 0.50 1
(AM485590) Vitis vinifera contig VV78X126751.10, whole genom... 46 0.52 2
(AM446758) Vitis vinifera contig VV78X157915.4, whole genome... 46 0.98 2
(AC109375) Rattus norvegicus clone CH230-288G13, *** SEQUENC... 34 1.1 6
(DU726698) Ynhw15484 HW-YUBAC Bos taurus genomic clone HW-YU... 42 1.1 2
(AE017263) Mesoplasma florum L1 complete genome. 34 1.1 13
(CC770380) CH240_5I15.TJ CHORI-240 Bos taurus genomic clone ... 42 1.1 2
(CR811122) GR0AAA34DE01FM1 INRA BAC Bos taurus genomic clone... 42 1.3 2
(CT027623) Zebrafish DNA sequence from clone DKEY-65L23 in l... 46 2.0 1
(AM488764) Vitis vinifera contig VV78X021896.11, whole genom... 46 2.0 1
(AM483371) Vitis vinifera contig VV78X122207.5, whole genome... 46 2.0 1
(AM443170) Vitis vinifera contig VV78X259707.1, whole genome... 46 2.0 1
(CU942406) Pig DNA sequence from clone CH242-482G5 on chromo... 46 2.0 1
(AC147458) Felis catus clone RP86-99M14, WORKING DRAFT SEQUE... 46 2.0 1
(CU914414) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(ER383224) 1094338886292 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.0 1
(EJ323032) 1095403432066 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.0 1
(CT452423) Sus scrofa genomic clone CH242-416I19, genomic su... 46 2.0 1
(CT088444) Sus scrofa genomic clone PigE-149M18, genomic sur... 46 2.0 1
(DR390632) USDA-FP_150564 Adult Alate Aphis gossypii (WHAGA)... 46 2.0 1
(DR390347) USDA-FP_150200 Adult Alate Aphis gossypii (WHAGA)... 46 2.0 1
(GE465081) 294763211 Nasonia vitripennis Adult Female Nasoni... 46 2.0 1
(GE456388) 294599666 Nasonia vitripennis Adult Female Nasoni... 46 2.0 1
(GE432809) 294533905 Nasonia vitripennis Adult Male Nasonia ... 46 2.0 1
(GE413832) 294493280 Nasonia vitripennis Adult Male Nasonia ... 46 2.0 1
(GE408851) 293803743 Nasonia vitripennis Female Pupae Nasoni... 46 2.0 1
(GE406854) 293797505 Nasonia vitripennis Female Pupae Nasoni... 46 2.0 1
(GE397849) 293782278 Nasonia vitripennis Female Pupae Nasoni... 46 2.0 1
(AJ408997) Uncultured bacterium 16S rRNA gene, clone HuCB23. 46 2.0 1
(AL034349) Human DNA sequence from clone RP1-86D1 on chromos... 42 2.6 5
(FN357908) Schistosoma mansoni genome sequence supercontig S... 38 3.1 9
(AC128753) Rattus norvegicus clone CH230-468B19, WORKING DRA... 38 3.3 3
(AM429247) Vitis vinifera contig VV78X198099.4, whole genome... 38 4.2 2
(DU227889) 1098574268347 CHORI-243 Ovis aries genomic clone ... 36 4.2 2
(EJ094872) 1095460273652 Global-Ocean-Sampling_GS-26-01-01-1... 36 4.4 2
(EJ957322) 1093018979670 Global-Ocean-Sampling_GS-30-02-01-1... 42 4.4 2
(AM464393) Vitis vinifera contig VV78X246599.25, whole genom... 34 4.5 4
(CL502360) SAIL_711_E09.v2 SAIL Collection Arabidopsis thali... 34 5.1 2
(EK522715) 1095515631188 Global-Ocean-Sampling_GS-32-01-01-1... 42 5.2 2
(BJ430244) Dictyostelium discoideum cDNA clone:ddv6g16, 3' e... 36 7.0 2
(CP000488) Candidatus Ruthia magnifica str. Cm (Calyptogena ... 36 7.4 11
(AC170546) Bos taurus clone CH240-228L15, WORKING DRAFT SEQU... 38 7.8 5
(CU463306) Mouse DNA sequence from clone RP24-83C8 on chromo... 44 7.9 1
(AC163678) Mus musculus BAC clone RP24-104D14 from chromosom... 44 7.9 1
(AC134471) Mus musculus BAC clone RP23-121J12 from chromosom... 44 7.9 1
(AC119573) Mus musculus chromosome 15, clone RP23-75H23, com... 44 7.9 1
(AC217029) Pan troglodytes BAC clone CH251-555C23 from chrom... 44 7.9 1
(AC073267) Homo sapiens BAC clone RP11-419J10 from 7, comple... 44 7.9 1
(AC004402) Homo sapiens Cosmid g5129z061, complete sequence. 44 7.9 1
(AC004391) Homo sapiens Cosmid g5129s018, complete sequence. 44 7.9 1
(CU915694) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.9 1
(AC093676) Homo sapiens chromosome UNK clone RP11-617C20, **... 44 7.9 1
(AC199674) Lemur catta clone LB2-211K9, WORKING DRAFT SEQUEN... 44 7.9 1
(AC181502) Strongylocentrotus purpuratus clone R3-1111D7, WO... 44 7.9 1
(GS243445) DB078A03.F Brachypodium distachyon Bd21 BamH1 BAC... 44 7.9 1
(AQ408877) HS_5067_A2_B07_SP6E RPCI-11 Human Male BAC Librar... 44 7.9 1
(ER427247) 1092963758614 Global-Ocean-Sampling_GS-35-01-01-1... 44 7.9 1
(EK072975) 1092961007892 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1
(EK040319) 1092959513316 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1
(DU684987) Bst017523 lambda03 Boechera stricta genomic clone... 44 7.9 1
(CT458535) Sus scrofa genomic clone CH242-523B6, genomic sur... 44 7.9 1
(ES391440) MUS10-M09.x1d-t SHGC-MUS Mytilus californianus cD... 44 7.9 1
(CO537202) tah67e07.x1 Hydra EST UCI 5 Hydra magnipapillata ... 44 7.9 1
(AP007356) Lotus japonicus genomic DNA, chromosome 4, clone:... 38 8.3 6
(AF362375) Dictyostelium discoideum histidine kinase DhkE (d... 42 9.1 2
>(BJ343100) Dictyostelium discoideum cDNA clone:dda22d05, 3' end,
single read.
Length = 738
Score = 856 bits (432), Expect(2) = 0.0
Identities = 432/432 (100%)
Strand = Plus / Minus
Query: 1 ataaatattggatttataaatatcagcatatatacgcccccatttttgtatggtctatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ataaatattggatttataaatatcagcatatatacgcccccatttttgtatggtctatat 679
Query: 61 tcgattaaatatagattatgtgattatagtgttttcacagagggttcaattggaagggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcgattaaatatagattatgtgattatagtgttttcacagagggttcaattggaagggtt 619
Query: 121 agaactgcaaatgcttcaaattttgaaatcatctcttttatcattggtaaattggttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agaactgcaaatgcttcaaattttgaaatcatctcttttatcattggtaaattggttttc 559
Query: 181 attgtttttagattcatcataccattacaatatcatagtttagtaaacttgttaacttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attgtttttagattcatcataccattacaatatcatagtttagtaaacttgttaacttat 499
Query: 241 ttctttatcgctgaattcttttttggtctttatttatcctttggtttccaagttagtcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttctttatcgctgaattcttttttggtctttatttatcctttggtttccaagttagtcat 439
Query: 301 tctgctgataatttaaaaattgttgcaacaagtgtaaatgaaaatgatgaaccaacaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctgctgataatttaaaaattgttgcaacaagtgtaaatgaaaatgatgaaccaacaaat 379
Query: 361 gttgatgaagattgggcaattcatcaaattaaaactactcaagattatggtattaattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttgatgaagattgggcaattcatcaaattaaaactactcaagattatggtattaattca 319
Query: 421 tatatgtgttta 432
||||||||||||
Sbjct: 318 tatatgtgttta 307
Score = 454 bits (229), Expect(2) = 0.0
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 440 cgggtggtgtaaatttacaagttgttcatcacttgtttccatcaatttcacaagaatact 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgggtggtgtaaatttacaagttgttcatcacttgtttccatcaatttcacaagaatact 240
Query: 500 atggtgaattagtaccaattattaaaaaggtttgtgatgagtatgatgtacattataata 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atggtgaattagtaccaattattaaaaaggtttgtgatgagtatgatgtacattataata 180
Query: 560 ttcaaccaacattttatgctgcttttaaatctcatattgattttctttacaatatgggta 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttcaaccaacattttatgctgcttttaaatctcatattgattttctttacaatatgggta 120
Query: 620 ataatgaaaattatgtaagaaaatctgtaaccgactagtaattgaacct 668
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ataatgaaaattatgtaagaaaatctgtaaccgactagtaattgaacct 71
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,008,039,570
Number of extensions: 60611430
Number of successful extensions: 4990647
Number of sequences better than 10.0: 132
Length of query: 738
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 714
Effective length of database: 104,103,628,548
Effective search space: 74329990783272
Effective search space used: 74329990783272
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home