Dictyostelium discoideum cDNA Contig-U13938-1

Assembled

Chromosomal Location of Contig-U13938-1

Sequence Contig-U13938-1

CAAAAAAAAA AAAAAAAAAA AAAAAAAAAG TAAAGTAAAG AAATGGAAAA
ATTTCAAAGA GAATTAACAG ATCAAGCAAT TAAAAAGATT GTTTCAACAT
TAAGATCAAT TTTATATAGA ATAGAAACTA AAGACTGTAA AGATGTTGTT
GGTTTATTAG AACCATATAT GGATGAAGAA TCTTATCAAA ATATTAGAGA
GACATTTTTA AGATATCAAG AGAAACATAG ATTAAATGAA TTTGCAGATG
ATGAAGAGGA TATTTTAGAA GATGAAGAAG AGGATGAAGA TGAAGATAAT
ATAAATAAAA ATATAGATGA TAACACCACC TCCACCACCA ACAAATGTGG
TGTTAATGGC ATTGAAAATA TATCAAATAA ATATTTATTA CAAATTCAAG
ATGTTGCAGC AAGATTGGTT TCATCATCAA CTGCATCAGC ATCAACTTCA
AATGGTAGTG GTTCCAATGG TGAAAGTGGC ACCACTCGTT ATAATAGAAT
TGCAGATAGA CAATCACGTG AAAATAGCTC ACAAAGCTCA AATGGTGGTG
GTGGTGGTGG TAGTGGTGAG AATGGCACAC GTAAAAAGAG AAGAGGTGCT
TCAAAGGGAT TCCCATTGAA TTGGGGTCTC ATCATGTCAA TGGCCTCAAA
TATCACACTC GATCAAGTTC AATCAATGCT CAATGTACTC ATTATGGTTT
TATCTCGTAC TCCAATCAAC GTACTCTTCA AACAATTCCA TGAATATAAA
TTCATCATCT CCTCTGTTTT CGATCTTTTA AATGCAATAC TTCGTGGTGA
TATCAAAGAT ATTGGCACTT GTCTCATCAT TGCTGTCATT GGTGTCATTC
GTTTCTCTCA ACGTAAAAAT TTAACTTTAA TTACAACTTT GGAAGTTGCA
AAATATCTTT ACAATTCTGG TAACAAAAAG AAGTTTGGTT TAATCAGATC
TGTTTCATTG GTTGCTTTCC TTTCCAACCT TTTCAAACTT GTAAATCCAC
CACCAGTAAC TCCATTAGAT GTTATACAAT TAGTTAAATC CCAAATTCAA
TCAAGATTAT AAATCCTTCT TTTTTTTTAA AAAAAATAAA ATAAAATAAA
ATAAAAAAAA A

Translated Amino Acid Sequence Contig-U13938-1

qkkkkkkkkk*SKEMEKFQRELTDQAIKKIVSTLRSILYRIETKDCKDVVGLLEPYMDEE
SYQNIRETFLRYQEKHRLNEFADDEEDILEDEEEDEDEDNINKNIDDNTTSTTNKCGVNG
IENISNKYLLQIQDVAARLVSSSTASASTSNGSGSNGESGTTRYNRIADRQSRENSSQSS
NGGGGGGSGENGTRKKRRGASKGFPLNWGLIMSMASNITLDQVQSMLNVLIMVLSRTPIN
VLFKQFHEYKFIISSVFDLLNAILRGDIKDIGTCLIIAVIGVIRFSQRKNLTLITTLEVA
KYLYNSGNKKKFGLIRSVSLVAFLSNLFKLVNPPPVTPLDVIQLVKSQIQSRL*illff*
kk*nkik*kk

Homology Contig-U13938-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...  1017  0.0
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U10073-1 (Contig-U10073-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U04147-1 (Contig-U04147-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14140-1 (Contig-U14140-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12071-1 (Contig-U12071-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10899-1 (Contig-U10899-1Q) /CSM_Contig/Conti...    42  0.001

Homology Contig-U13938-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C92809) Dictyostelium discoideum slug cDNA, clone SSF371.        993   0.0    2
(BJ348938) Dictyostelium discoideum cDNA clone:dda34h23, 3' ...   993   0.0    2
(BJ347359) Dictyostelium discoideum cDNA clone:dda26j21, 3' ...   993   0.0    2
(BJ402110) Dictyostelium discoideum cDNA clone:dds20d13, 3' ...   922   0.0    2
(BJ343645) Dictyostelium discoideum cDNA clone:dda16a21, 3' ...   803   0.0    2
(AU038065) Dictyostelium discoideum slug cDNA, clone SSH222.      993   0.0    2
(C94248) Dictyostelium discoideum slug cDNA, clone SSK591.        486   0.0    3
(BJ402307) Dictyostelium discoideum cDNA clone:dds16a09, 3' ...   757   0.0    2
(BJ331321) Dictyostelium discoideum cDNA clone:dda34h23, 5' ...   486   0.0    2
(BJ329957) Dictyostelium discoideum cDNA clone:dda26j21, 5' ...   430   0.0    3

Homology Contig-U13938-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116979_68(AC116979|pid:none) Dictyostelium discoideum chromoso...   492   e-138
FM204883_927(FM204883|pid:none) Streptococcus equi subsp. equi 4...    37   1.3
FM204884_1121(FM204884|pid:none) Streptococcus equi subsp. zooep...    35   4.8