Dictyostelium discoideum cDNA Contig-U13937-1

Assembled

Chromosomal Location of Contig-U13937-1

Sequence Contig-U13937-1

GAAATAGGGA TGATGAATGA AGAAAATAAT GAAGTTAGTT CATATGAATA
TATGGATATT GATAATAATA GTTGGTATAG TGGTGATCCA TTTGTTTCGG
AAGTTTTAAA GGATGAAAAG GAAACATTGG GATTAATTGA AAAGAAGAGA
TTAGAATTAG AATCTGTTGA ACGTACCATT TCAACCTTAA GAGAAGCAAA
AGATTCAATT TTAAAAGATA TAATGATAAA AACTCAATTT TTAAAAAGTG
TTCAAAGAAA AAAAGAAGAT CAAATTAAAA CCATAACCAA TAGTTATCAT
TCAATTGCAA CAAAATATAA TCTTTCNCAA ATTGAATCAC GTTCATTAAC
ATTAATCTTA CCAGAAGAAG TGATGTTACA TATTTTAAAA TTTTTATCAC
CAATTGATCT TTGTAGAGGT GTTTGTAGAG TTAGCTTAAA ATGGAGATCA
TTGGCTTTTG ATATTAGTCT TTGGAGAGAT CTTTGTTTAC AAAGAAGATT
ACTCGATGGT TCAAATTATG GTTATTTCCC TCTAATTGAT AATCAATTAA
CAAATAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAT
AATAATAATA ATAATAATAA TAATAATAAT TCATTATTAG AATCTGAATC
ATTGTCAAAT TCAAATAGTT CAATTGGTTC ATCATGTTCA ACTTATTCCT
CCACTTCTTC TTCTTCCTCA AAACCTTTAT ATGGCGATAA TTGGTACGTT
GGTGAATTTA GAAAAGATAA TAATTGGAGA AAAGGTAAAT ATAGTACAAC
TATTATTAGA GGCCATAAAG AGATTGTATG GAGTTTATTA TTTGAATCCG
ATTCAAATAC ATTAATTAGT GGTAGTGAAG ATATGACAGT AAAGGTTTGG
GATTGTAATG GAATAGGATC AGGCGGTAAC AATAACGGTA TTGGTCAGTA
TCAAGATGAT ATTGAAGATA GTAAAAAACG TTGTAAGAAA ACATTAACTG
GTCATAAAAA TGGTACCATT TGTTTAGGTA GTACTCCAAC TAGATTAGTT
AGTGGTAGTG CTGATGGTAG CTTAAAAATA TGGGATCGTC AAGAGGGTAA
TTGTTTGGAA ACTATTCAAA CCCATAGTTC TGTTTGGTGT TTACAAATAA
TGGGTAATCA ATTAATTTGT GGTTGTGTTG ATGGTACCAT GAAAGTATTT
GATCTCAATA CTTCTGGTTG TGTACGTACA ATGAGAGGTC ATACAGCTCC
AGTAAGATGT TTACAAAGTG TCAATCATAA TGGTCAAGAG TTAATAGTTT
CTGGCTCCTA CGATAAAAGT ATTAAAATTT GGGATATGAA TGGTACTTGT
GTAAATACAA TTCGAGCTCA TACCCATAAA ATAAATTGTT TACAATATGA
AAATGGTCAA TTAGTAAGTG GTAGTCATGA TAGTTTATTA AAGATTTGGG
ATATGAATGG CGGTTTAATA CATACATTAC AAGGTCATGA TAATATGATT
CATTGTTTAC AATTTAAAGG AAATAAACTA TTAAGTGGTT CAACCGATAG
TACCATAAGA CTTTGGGATT TAAAAACTGG CTCACATATA AATACTATAA
AGGGGCAATC CGCAGTGTGT TGCCTAAAAT TTAATGATTC AAAATTAATT
ACTGGTTATG AAGATAGTTC AATTAAAATA TTTGACTTTT CTTAACTTCA
AAAAAAAAGA AAAAACAAAT TATAATAATA ATAATAATAA TAATAATAAT
AATAATAATA ATAATAATAA TAATAATAAT AATAATAATA AAAATAATAA
TAATTATAAT AATATTAAAT AATTTTAAAA ATTAATAAAT AAAATAAATA
ATATTTAATT TAAAAA

Translated Amino Acid Sequence Contig-U13937-1

EIGMMNEENNEVSSYEYMDIDNNSWYSGDPFVSEVLKDEKETLGLIEKKRLELESVERTI
STLREAKDSILKDIMIKTQFLKSVQRKKEDQIKTITNSYHSIATKYNLSQIESRSLTLIL
PEEVMLHILKFLSPIDLCRGVCRVSLKWRSLAFDISLWRDLCLQRRLLDGSNYGYFPLID
NQLTNNNNNNNNNNNNNNNNNNNNNNNNNNSLLESESLSNSNSSIGSSCSTYSSTSSSSS
KPLYGDNWYVGEFRKDNNWRKGKYSTTIIRGHKEIVWSLLFESDSNTLISGSEDMTVKVW
DCNGIGSGGNNNGIGQYQDDIEDSKKRCKKTLTGHKNGTICLGSTPTRLVSGSADGSLKI
WDRQEGNCLETIQTHSSVWCLQIMGNQLICGCVDGTMKVFDLNTSGCVRTMRGHTAPVRC
LQSVNHNGQELIVSGSYDKSIKIWDMNGTCVNTIRAHTHKINCLQYENGQLVSGSHDSLL
KIWDMNGGLIHTLQGHDNMIHCLQFKGNKLLSGSTDSTIRLWDLKTGSHINTIKGQSAVC
CLKFNDSKLITGYEDSSIKIFDFS*lqkkrknkl***********************k**
*l**y*iilkink*nk*yli*k

Homology Contig-U13937-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13937-1 (Contig-U13937-1Q) /CSM_Contig/Conti...  2119  0.0
Contig-U11136-1 (Contig-U11136-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U13964-1 (Contig-U13964-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U05965-1 (Contig-U05965-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U09789-1 (Contig-U09789-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U14747-1 (Contig-U14747-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...    36  0.13

Homology Contig-U13937-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ382312) Dictyostelium discoideum cDNA clone:ddc44h09, 3' ...  1378   0.0    2
(AU061070) Dictyostelium discoideum slug cDNA, clone SLC811.      886   0.0    2
(BJ343618) Dictyostelium discoideum cDNA clone:dda16k17, 3' ...   391   0.0    2
(AU061783) Dictyostelium discoideum slug cDNA, clone SLF864.      442   e-119  1
(AU053170) Dictyostelium discoideum slug cDNA, clone SLF864.      242   4e-59  1
(CZ871959) OC__Ba0270M06.f OC__Ba Oryza coarctata genomic cl...    54   0.021  1
(FE261351) CAZO1950.fwd CAZO Naegleria gruberi Flagellate St...    34   0.028  3
(FE261350) CAZO1950.rev CAZO Naegleria gruberi Flagellate St...    34   0.028  3
(FE240290) CAPG5780.rev CAPG Naegleria gruberi amoeba stage ...    34   0.035  3
(FE233407) CAPG2269.rev CAPG Naegleria gruberi amoeba stage ...    34   0.036  3

Homology Contig-U13937-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AX722159_1(AX722159|pid:none) Sequence 17 from Patent WO03024999...   220   2e-55
(Q969H0) RecName: Full=F-box/WD repeat-containing protein 7; Alt...   220   2e-55
AK223449_1(AK223449|pid:none) Homo sapiens mRNA for F-box protei...   220   2e-55
AF383178_1(AF383178|pid:none) Homo sapiens F-box protein FBX30 m...   220   2e-55
AL953881_1(AL953881|pid:none) Zebrafish DNA sequence from clone ...   219   3e-55
CR859650_1(CR859650|pid:none) Pongo abelii mRNA; cDNA DKFZp459C1...   219   3e-55
BC037320_1(BC037320|pid:none) Homo sapiens F-box and WD-40 domai...   218   5e-55
CR860672_1(CR860672|pid:none) Pongo abelii mRNA; cDNA DKFZp459M2...   217   1e-54
AK032174_1(AK032174|pid:none) Mus musculus adult male olfactory ...   202   3e-50
(Q9VZF4) RecName: Full=F-box/WD repeat-containing protein 7; Alt...   201   1e-49