Dictyostelium discoideum cDNA Contig-U13927-1

Assembled

Chromosomal Location of Contig-U13927-1

Sequence Contig-U13927-1

CACTGTTGGC CTACTGGAAA AATTTTGTTG AACAACAACA CAAACAAACT
AGAAATGTCT AAAGATACAA CAGTTTCATT AGAACAACTC TTTAAAGAGT
TAGATGAATA TATCATAAAT TCACAATTTA AAAAAGCAAT TCGTGTTTGT
AATAAAATTT TATCAGTAAA TGGTAATGAT TCAGAAGCAT TCCAATGTAA
AGTAATTTGT TTAATGCAAC TTAGTAATTT TACAGAAGCA ATTGAATGTT
TTAAAAAACC AGAACAAATT CAATCAATGC AATTCGAATA TTCATATTGT
CTTTATTCAA CTGCAAAATA TCAAGAAGCA TTAACTCAAT TAGAAAAGCA
ATCATCAAAA GAAACTAAAT CTTTAGAACT TGAAGCTCAA ATCTACTACA
AATTAGAAAA TTATCAAAAA ACAATTTCAA TTTATGAAAG TTTATTATCA
AAACCAGGTT ATTCAGATTC AATTGAATTT ATTACCAATC TTTGTGCAGT
TTATTTAGAT GCAGGTAAAT TCAATGAATG TCAAGAATTA TTAAATAAAA
ATAAGAGTCA ACAAACAAAG ACCCATGAAT TAGCATTCAA TTCTGCATGT
TTAGCAATTT CAAAGAATGA TACTAAAACT GCTGAAACTC AATTAAAATT
AGCAAAGAAA ATTTGTACAG ATTCATTAAA AAAAGATGGA TTTAGTGAAG
AAGAGATTAA AGAAGAACAA ACATCAATCG ATGTTCAACT AGGTTATGTT
CAACAAATTT GTGGTAACTT GGAGAAATCT TTAGAACAAT ATCAAAATGT
ATTGGAACAA CAAGTTGGTG ATAGTGCAAC ATTGGTAGCT ACAAATAATA
GTATTTCAGT ACGTTCAATT CTTCAATCTG ACCAATGGTC AACTCAACCA
AAAGAGTATA CTCATGCAAT GGATTCATTG AAATCTTTAT TAACAGAGGC
TGAATCAACT CGTTTAAATA GTAAACAAAA GAAAGTCATC AATTATAATC
TTTGTTTATT ATTAGTACAA TTGAAAAAAG TTAGTCAATG TGAAGAGTTA
ATTAAAACTT TGAAATCAAA ATACGGCCAA CAACAACAAC AAGTTGATAC
ATCATTCGTT GAAGATTTAG ATATTATTTC AAGTTTCATT ATTAATTAAA
GAAAAGAAAT TTAAAGATGC AGAGAAATTA TTATTAAAGA ATAATACTAC
TACTGGTTCA ATTAAATCAC AATTATTATT AGCACAAATT TATTTATTGG
ATAATAATAA TGTTGCAAAG GCATTGAATG TTTTGGAGAA ATTAGATTCA
TCAGTTTCAT TGAGACCTGG TATTGTCGCT ACAAAGGTTG CATTGTATGA
AAAATCGGGT GATTTAGAAA AGGCAGTCAA TAGTTTAGAT GATTTAATCT
CAATTTTTGA TAAACAAAAG AAATCTGAAA AAGATGAAGA GATTTATGTT
AACCTTTTGA AAGCAAGTGG TAACTTTAAA TTAAAACATC ATAAATATAG
AGAAGCCTCT GATATGTTTG ATAGAGTATT AAAGATTAAT CCAAATGATT
TAATAGCTTT ACCATCTTAC ATTGTTGCCA CTTCACATTT CGATCCATCT
TTATCTCAAA AGTATGAAGG TAAATTACCA AATATTAAAT TTGAATCTAA
AATTGATATT GATTTAATTG AAAAGTATGG TTTAACTTTT GAAAAGAAAT
TAAATTTAAA TGAAGATTCA AATTCATCAT CACCAACAAC AACAACTACT
ACTACTACCA AATCTACCAA ACCAACTGCA ACAGAAGTTG TTAAAATTAA
GAAATCTAAA AAGAAATTAC CAAAAGTAAT GAAACCAAAT TATGTTCCAG
ACCCAGGTCG TTGGTTACCA AAATGGCAAC GTGCAAATGC TAAAGCTGCA
AGAAGTAAAA AGAATAAGGA TATCATTAAA GGTCCACAAG GTATTGCATC
TGCTTCTCAA ACTGCTTCAC TCTTTGTTCA AGAATCAAAA AATACAAATA
CAAACAATAA CAATACTCAA TCTTCTAAAT CTGAAAAACC AAGAAACATT
CATAAAAAGA AATCAAAAAA ATAGATAATT AATAATATTT AAATA

Translated Amino Acid Sequence Contig-U13927-1

HCWPTGKILLNNNTNKLEMSKDTTVSLEQLFKELDEYIINSQFKKAIRVCNKILSVNGND
SEAFQCKVICLMQLSNFTEAIECFKKPEQIQSMQFEYSYCLYSTAKYQEALTQLEKQSSK
ETKSLELEAQIYYKLENYQKTISIYESLLSKPGYSDSIEFITNLCAVYLDAGKFNECQEL
LNKNKSQQTKTHELAFNSACLAISKNDTKTAETQLKLAKKICTDSLKKDGFSEEEIKEEQ
TSIDVQLGYVQQICGNLEKSLEQYQNVLEQQVGDSATLVATNNSISVRSILQSDQWSTQP
KEYTHAMDSLKSLLTEAESTRLNSKQKKVINYNLCLLLVQLKKVSQCEELIKTLKSKYGQ
QQQQVDTSFVEDLDIISSFIIN*rkei*rcreiiike*yyywfn*itiiistnlfig***
cckgiecfgeirfisfietwycrykgciv*kig*frkgsq*fr*fnlnf**tkei*kr*r
dlc*pfeskw*l*ikts*i*rsl*yv**sikd*sk*fnsftilhcchftfrsifiskv*r
*itky*i*i*n*y*fn*kvwfnf*keikfk*rfkfiitnnnnyyyyqiyqtncnrsc*n*
ei*keitksnetklcsrprslvtkmatckc*sckk*ke*gyh*rstrycicfsncftlcs
rikkykykq*qysif*i*ktkkhs*keikkidn**yln

Homology Contig-U13927-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti...  4070  0.0
Contig-U11000-1 (Contig-U11000-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U05254-1 (Contig-U05254-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U03497-1 (Contig-U03497-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U13706-1 (Contig-U13706-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U12287-1 (Contig-U12287-1Q) /CSM_Contig/Conti...    38  0.038

Homology Contig-U13927-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ441537) Dictyostelium discoideum cDNA clone:ddv47c01, 3' ...  1350   0.0    1
(BJ423000) Dictyostelium discoideum cDNA clone:ddv47b19, 5' ...  1275   0.0    1
(BJ358265) Dictyostelium discoideum cDNA clone:dda56f24, 3' ...  1275   0.0    2
(BJ441753) Dictyostelium discoideum cDNA clone:ddv47b19, 3' ...  1263   0.0    1
(BJ425750) Dictyostelium discoideum cDNA clone:ddv56a22, 5' ...  1253   0.0    1
(BJ420160) Dictyostelium discoideum cDNA clone:ddv38m10, 5' ...  1245   0.0    1
(BJ419572) Dictyostelium discoideum cDNA clone:ddv36c16, 5' ...  1233   0.0    1
(BJ422776) Dictyostelium discoideum cDNA clone:ddv47c01, 5' ...  1231   0.0    1
(BJ358470) Dictyostelium discoideum cDNA clone:ddc1n16, 5' e...  1229   0.0    1
(BJ438770) Dictyostelium discoideum cDNA clone:ddv38m10, 3' ...  1227   0.0    1

Homology Contig-U13927-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54EP7) RecName: Full=Signal recognition particle 72 kDa protei...   700   0.0
(P33731) RecName: Full=Signal recognition particle 72 kDa protei...   153   6e-50
BC017057_1(BC017057|pid:none) Homo sapiens signal recognition pa...   153   2e-49
BC032609_1(BC032609|pid:none) Homo sapiens signal recognition pa...   152   3e-49
BC141425_1(BC141425|pid:none) Synthetic construct Mus musculus c...   154   4e-49
AK133784_1(AK133784|pid:none) Mus musculus 8 days embryo whole b...   154   4e-49
BC019196_1(BC019196|pid:none) Mus musculus signal recognition pa...   154   8e-49
AE014297_2930(AE014297|pid:none) Drosophila melanogaster chromos...   149   4e-48
BC073609_1(BC073609|pid:none) Xenopus laevis MGC82921 protein, m...   143   4e-47
CR761516_1(CR761516|pid:none) Xenopus tropicalis finished cDNA, ...   144   7e-47