Homology Contig-U13906-1 vs Protein
Query= Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Contig-U13906-1Q.Seq.d
(1234 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC152635_1(BC152635|pid:none) Danio rerio signal recognition par... 83 2e-14
BC146623_1(BC146623|pid:none) Xenopus laevis hypothetical protei... 68 8e-10
AF195951_1(AF195951|pid:none) Homo sapiens signal recognition pa... 67 1e-09
AK027322_1(AK027322|pid:none) Homo sapiens cDNA FLJ14416 fis, cl... 67 1e-09
A58947(A58947;S12981) signal recognition particle 68K protein - ... 65 5e-09
AJ720601_1(AJ720601|pid:none) Gallus gallus mRNA for hypothetica... 65 6e-09
AL645861_2(AL645861|pid:none) Mouse DNA sequence from clone RP23... 64 1e-08
AL645861_1(AL645861|pid:none) Mouse DNA sequence from clone RP23... 64 1e-08
(Q9VSS2) RecName: Full=Signal recognition particle 68 kDa protei... 63 2e-08
(Q8BMA6) RecName: Full=Signal recognition particle 68 kDa protei... 62 3e-08
BT030729_1(BT030729|pid:none) Bos taurus signal recognition part... 62 4e-08
BC150016_1(BC150016|pid:none) Bos taurus signal recognition part... 62 4e-08
(Q20822) RecName: Full=Probable signal recognition particle 68 k... 55 7e-06
AB022212_10(AB022212|pid:none) Arabidopsis thaliana genomic DNA,... 54 9e-06
BT084878_1(BT084878|pid:none) Zea mays full-length cDNA clone ZM... 51 1e-04
EU972117_1(EU972117|pid:none) Zea mays clone 375382 signal recog... 50 2e-04
AE014186_296(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 48 8e-04
AY815251_1(AY815251|pid:none) Schistosoma japonicum SJCHGC09421 ... 44 0.009
CP000061_339(CP000061|pid:none) Aster yellows witches'-broom phy... 43 0.026
AL844507_87(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 42 0.034
EU867791_1(EU867791|pid:none) Plasmodium knowlesi normocyte bind... 42 0.045
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 42 0.045
DQ321780_1(DQ321780|pid:none) Trichomonas vaginalis strain NIH-C... 42 0.045
AL844509_678(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.077
AL844507_278(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.10
CR382129_703(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 40 0.13
A64505(A64505)P115 homolog - Methanococcus jannaschii 40 0.13
AL844509_552(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.17
AL844506_217(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.17
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme... 40 0.22
CP000939_1415(CP000939|pid:none) Clostridium botulinum B1 str. O... 40 0.22
CP001083_1420(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 40 0.22
(A9KMD6) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.38
AP009608_345(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 39 0.38
AY445042_1(AY445042|pid:none) Streptococcus pyogenes SpyM6 mefA ... 39 0.38
CP001078_1122(CP001078|pid:none) Clostridium botulinum E3 str. A... 39 0.38
CR380959_174(CR380959|pid:none) Candida glabrata strain CBS138 c... 39 0.50
(Q86KL1) RecName: Full=Probable E3 ubiquitin-protein ligase bre1... 39 0.50
AE002126_2(AE002126|pid:none) Ureaplasma parvum serovar 3 str. A... 38 0.65
FJ406948_1(FJ406948|pid:none) Plasmodium reichenowi isolate CDC-... 38 0.65
(Q94481) RecName: Full=FNIP repeat-containing protein cigB; 38 0.85
CP000382_361(CP000382|pid:none) Clostridium novyi NT, complete g... 38 0.85
CP001581_1445(CP001581|pid:none) Clostridium botulinum A2 str. K... 38 0.85
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m... 38 0.85
CR382400_30(CR382400|pid:none) Plasmodium falciparum chromosome ... 38 0.85
AL844509_475(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.85
AJ545046_1(AJ545046|pid:none) Mycoplasma hominis vmp gene for va... 38 0.85
AL844505_260(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.85
AB250899_1(AB250899|pid:none) Plasmodium falciparum rhoph1/clag2... 37 1.1
AJ416752_8(AJ416752|pid:none) Mycoplasma hominis uvrA gene (part... 37 1.1
BX538351_13(BX538351|pid:none) Cryptosporidium parvum chromosome... 37 1.1
(Q54ML4) RecName: Full=HEAT repeat-containing protein 1 homolog; 37 1.1
CR940348_213(CR940348|pid:none) Theileria annulata strain Ankara... 37 1.1
(Q876G9) RecName: Full=Myosin-2; AltName: Full=Class V unconvent... 37 1.1
AL035476_62(AL035476|pid:none) Plasmodium falciparum MAL4P3. &A... 37 1.4
(Q9JIL8) RecName: Full=DNA repair protein RAD50; EC=3.6... 37 1.4
CP000673_3536(CP000673|pid:none) Clostridium kluyveri DSM 555, c... 37 1.4
AE017308_276(AE017308|pid:none) Mycoplasma mobile 163K complete ... 37 1.4
AP009049_3188(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 37 1.4
CP000025_909(CP000025|pid:none) Campylobacter jejuni RM1221, com... 37 1.4
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p... 37 1.4
(O51066) RecName: Full=DNA topoisomerase 4 subunit A; E... 37 1.4
CR382137_815(CR382137|pid:none) Debaryomyces hansenii strain CBS... 37 1.4
CP001047_144(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 37 1.4
BC171526_1(BC171526|pid:none) Danio rerio si:rp71-10d23.3, mRNA ... 37 1.4
CP001080_123(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 37 1.4
AP006628_481(AP006628|pid:none) Onion yellows phytoplasma OY-M D... 37 1.4
AL844508_120(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.9
CP000713_1959(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 37 1.9
CP000099_104(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 37 1.9
AP009049_1815(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 37 1.9
AF226280_49(AF226280|pid:none) Campylobacter jejuni 81-176 virul... 37 1.9
AE014186_397(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.9
AL035476_44(AL035476|pid:none) Plasmodium falciparum MAL4P3. &A... 37 1.9
(Q9UTK5) RecName: Full=Abnormal long morphology protein 1; AltNa... 37 1.9
FM992695_278(FM992695|pid:none) Candida dubliniensis CD36 chromo... 37 1.9
CP000814_44(CP000814|pid:none) Campylobacter jejuni subsp. jejun... 36 2.5
U75357_1(U75357|pid:none) Schizosaccharomyces pombe myosin II (m... 36 2.5
AE014187_468(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 2.5
(Q9USI6) RecName: Full=Myosin type-2 heavy chain 1; AltName: Ful... 36 2.5
AL929353_66(AL929353|pid:none) Plasmodium falciparum strain 3D7,... 36 2.5
AL844507_259(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 36 2.5
CP000246_2515(CP000246|pid:none) Clostridium perfringens ATCC 13... 36 2.5
BX908798_399(BX908798|pid:none) Parachlamydia-related symbiont U... 36 2.5
AL844504_205(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 36 2.5
(Q6BMV4) RecName: Full=Signal recognition particle subunit SRP68... 36 2.5
(P30319) RecName: Full=DNA polymerase; EC=2.7.7.7; &S2... 36 3.2
BA000026_157(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 36 3.2
AE001362_130(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 36 3.2
CP000727_1327(CP000727|pid:none) Clostridium botulinum A str. Ha... 36 3.2
AE014187_594(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 3.2
CP000395_35(CP000395|pid:none) Borrelia afzelii PKo, complete ge... 36 3.2
CP000742_1239(CP000742|pid:none) Methanococcus vannielii SB, com... 36 3.2
CP000728_1381(CP000728|pid:none) Clostridium botulinum F str. La... 36 3.2
CP001230_940(CP001230|pid:none) Persephonella marina EX-H1, comp... 36 3.2
CP001229_945(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 36 3.2
CR380956_330(CR380956|pid:none) Candida glabrata strain CBS138 c... 36 3.2
BC134211_1(BC134211|pid:none) Danio rerio novel protein similar ... 36 3.2
AB193597_1(AB193597|pid:none) Plasmodium falciparum rhoph1/clag2... 35 4.2
AM295250_2338(AM295250|pid:none) Staphylococcus carnosus subsp. ... 35 4.2
AM180355_2790(AM180355|pid:none) Clostridium difficile 630 compl... 35 4.2
(Q9LW85) RecName: Full=MAR-binding filament-like protein 1; &BT... 35 4.2
AB012247_4(AB012247|pid:none) Arabidopsis thaliana genomic DNA, ... 35 4.2
AL031746_4(AL031746|pid:none) Plasmodium falciparum DNA from MAL... 35 4.2
CP000867_1064(CP000867|pid:none) Methanococcus maripaludis C6, c... 35 4.2
CR380954_43(CR380954|pid:none) Candida glabrata strain CBS138 ch... 35 4.2
AM910996_176(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 4.2
AC183494_1(AC183494|pid:none) Brassica oleracea Contig C, comple... 35 4.2
CP000139_2135(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 35 4.2
AE014186_199(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.2
CP001078_2653(CP001078|pid:none) Clostridium botulinum E3 str. A... 35 4.2
AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.2
AP009049_999(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 35 4.2
CP000312_189(CP000312|pid:none) Clostridium perfringens SM101, c... 35 4.2
FM992689_883(FM992689|pid:none) Candida dubliniensis CD36 chromo... 35 4.2
B71602(B71602)probable secreted protein PFB0935w - malaria paras... 35 4.2
AL034558_15(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 35 4.2
CP000123_229(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 5.5
CU633899_513(CU633899|pid:none) Podospora anserina genomic DNA c... 35 5.5
AL929359_19(AL929359|pid:none) Plasmodium falciparum strain 3D7,... 35 5.5
AE014187_250(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 5.5
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 35 5.5
CR940348_171(CR940348|pid:none) Theileria annulata strain Ankara... 35 5.5
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 35 5.5
Z98547_25(Z98547|pid:none) Plasmodium falciparum MAL3P3, complet... 35 7.2
AB173880_1(AB173880|pid:none) Macaca fascicularis brain cDNA clo... 35 7.2
AK123761_1(AK123761|pid:none) Homo sapiens cDNA FLJ41767 fis, cl... 35 7.2
(Q8I3Z1) RecName: Full=MATH and LRR domain-containing protein PF... 35 7.2
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt... 35 7.2
(Q1ZXR2) RecName: Full=Probable serine/threonine-protein kinase ... 35 7.2
AE014187_126(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.2
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso... 35 7.2
FM992692_162(FM992692|pid:none) Candida dubliniensis CD36 chromo... 35 7.2
(Q2EEX5) RecName: Full=Uncharacterized membrane protein ycf78; A... 35 7.2
AM502254_65(AM502254|pid:none) Leishmania infantum chromosome 36. 35 7.2
CP000382_278(CP000382|pid:none) Clostridium novyi NT, complete g... 35 7.2
AL844502_99(AL844502|pid:none) Plasmodium falciparum 3D7 chromos... 35 7.2
Z75311_1(Z75311|pid:none) H.sapiens mRNA for RAD50. 35 7.2
A64127(A64127)hypothetical protein HI1515 - Haemophilus influenz... 35 7.2
CP000771_933(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 35 7.2
AM910996_572(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 7.2
CP000049_606(CP000049|pid:none) Borrelia turicatae 91E135, compl... 35 7.2
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 35 7.2
(Q06704) RecName: Full=Golgin IMH1; AltName: Full=Integrins and ... 34 9.4
AL844509_497(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.4
AY040821_1(AY040821|pid:none) Loligo pealei non-muscle myosin II... 34 9.4
CP000102_880(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 34 9.4
CR382125_227(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 34 9.4
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay... 34 9.4
AE014187_377(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.4
CP000524_589(CP000524|pid:none) Bartonella bacilliformis KC583, ... 34 9.4
(A7TM79) RecName: Full=Autophagy-related protein 2; 34 9.4
CP000246_195(CP000246|pid:none) Clostridium perfringens ATCC 131... 34 9.4
CP000702_1028(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 34 9.4
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n... 34 9.4
CP000867_1319(CP000867|pid:none) Methanococcus maripaludis C6, c... 34 9.4
AY954970_59(AY954970|pid:none) Staphylococcus phage Twort, compl... 34 9.4
BA000016_216(BA000016|pid:none) Clostridium perfringens str. 13 ... 34 9.4
CP000115_2826(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 34 9.4
(Q9UTR7) RecName: Full=Meiotic coiled-coil protein 3; AltName: F... 34 9.4
AE015929_1131(AE015929|pid:none) Staphylococcus epidermidis ATCC... 34 9.4
>BC152635_1(BC152635|pid:none) Danio rerio signal recognition particle
68, mRNA (cDNA clone MGC:173855 IMAGE:7450938), complete
cds. &BC160941_1(BC160941|pid:none)
Length = 593
Score = 83.2 bits (204), Expect = 2e-14
Identities = 84/357 (23%), Positives = 159/357 (44%), Gaps = 10/357 (2%)
Frame = +3
Query: 105 IEWKSKSIKVDEKLDEKLKIFNEFKKENENKLPKNINASIDTTSNISPIFNIYDKLVYNL 284
+EW+ +++ + K+D K +IF +NE A+I N ++Y+ L+
Sbjct: 263 VEWRGRTVPI--KID-KARIFLLGLADNE--------AAITQADNEETKEHLYESLLAEC 311
Query: 285 INCETIVKNDLSTLVRVNLKNKSVKSEIEEQSTRILLAYIMYHKMKYLYERNSILITMMQ 464
+ V+ +L T V+ + V + + + L +Y+ Y K+ + +RN + +Q
Sbjct: 312 RDTIQAVREELRTDVKQRERATDVAESSKVSNLQYLHSYLTYIKLWTVVKRNESMAHSLQ 371
Query: 465 RVLDGEKVDESAIKKKVKKVTWNDLVRLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLI 644
L + DE+ + + DL+RL ++ +S + + + ++ + +
Sbjct: 372 TKLKEPQTDENKRGPRPQ-----DLIRLYDIILQSLAELSSLQGLEEDHTFQKELSLKTL 426
Query: 645 LLKSIRLYYIAVCLAKSLKFSETMAVLDRVLT---NIQNVRKTNTKNQQILNDTNELESN 815
+ K+ R +YIA K+SE + + +RVL +Q+ K+ + N + L D EL +
Sbjct: 427 VYKAYRCFYIAQSYVLVKKWSEALVLYERVLKYTKEVQSKAKSLSNNLKDLPDVQELIAE 486
Query: 816 IKKQRSQIHANSFIQQLSENQDLKNQMSSLSIGGITTASGKSNDLISGLDSF--DTSFLT 989
+ ++ + A + + + +D+ S I T S + LD+F D++ L+
Sbjct: 487 VNAEKYSLQAAAIL----DTEDIAELPSQQQIKDTTPLSDR-------LDNFRLDSNLLS 535
Query: 990 EK-KXXXXXXXXXXXXAKPIFFDLAFNSVTFPSLD----QRKKGSSTGTPSKGLFGF 1145
++ KP+FFDLA N V P LD Q+ KG G KG FGF
Sbjct: 536 KQPNLVQFPPDFQPIPCKPLFFDLALNHVVLPPLDDKVEQKGKGGIAGY-FKGFFGF 591
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,508,798,467
Number of extensions: 26276243
Number of successful extensions: 78352
Number of sequences better than 10.0: 161
Number of HSP's gapped: 78119
Number of HSP's successfully gapped: 167
Length of query: 411
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 280
Effective length of database: 627,191,635
Effective search space: 175613657800
Effective search space used: 175613657800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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