Dictyostelium discoideum cDNA Contig-U13906-1

Assembled

Chromosomal Location of Contig-U13906-1

Sequence Contig-U13906-1

ATACATTAAC AATTATTGAA CAATCTTTAG AAGAATTAAA AAATCAAGAA
AATAAAAAGA AATCGTCAAC TTCTTCAACT ACTACCACTA CCGCTACAAC
AACAATTGAA TGGAAATCAA AATCAATTAA AGTTGATGAA AAACTTGATG
AAAAATTAAA AATATTTAAT GAATTTAAAA AAGAGAATGA AAATAAATTA
CCAAAGAATA TTAATGCATC AATTGATACA ACATCAAATA TTTCACCAAT
TTTCAATATT TATGATAAAT TGGTTTATAA TTTAATCAAT TGTGAAACCA
TTGTAAAGAA TGATCTATCA ACATTGGTTA GAGTAAACTT AAAGAATAAA
TCGGTAAAGA GTGAAATTGA AGAACAATCA ACTAGAATAC TCTTGGCCTA
CATTATGTAT CATAAAATGA AGTATCTCTA TGAGAGAAAT TCAATTTTAA
TCACAATGAT GCAAAGAGTA TTGGATGGTG AAAAGGTGGA TGAATCTGCA
ATTAAAAAGA AAGTTAAGAA AGTAACTTGG AATGATTTGG TACGTTTATC
AACTCATCAA GTTAAAGTCT ATACAATCAT GAGTGAAAGT AGGGATACCG
ATTCAAATAA AGAGATTGCA AGAGACCAAG ATGCTCAGCT AATCCTATTG
AAATCTATTA GACTCTATTA TATTGCAGTT TGTTTAGCTA AATCTTTGAA
ATTCTCTGAA ACTATGGCTG TATTGGATAG AGTACTTACA AACATTCAAA
ATGTTCGTAA AACCAATACT AAAAATCAAC AAATTCTTAA TGATACAAAT
GAATTGGAAT CAAATATAAA GAAACAAAGA TCACAAATTC ATGCAAACTC
TTTCATTCAA CAATTGTCAG AGAATCAAGA TTTAAAAAAT CAAATGTCTT
CTTTATCAAT TGGTGGTATT ACCACTGCCT CTGGCAAATC AAATGATTTA
ATCTCTGGTT TAGATTCATT CGATACCTCT TTCTTGACTG AAAAGAAATT
GGTTCAATTA CCACCACAAC TTCAACCTGT TCAAGCCAAA CCAATCTTTT
TCGATTTAGC TTTCAATAGT GTTACTTTCC CATCATTAGA TCAAAGAAAG
AAAGGTAGTT CAACTGGTAC TCCTTCAAAA GGTTTATTTG GTTTTTGGGG
TAGAGGTTAA AATTTTTTAA TTTTAAAAAT AATAATAACT AAAAATAAAA
AAATAAACAA TTAACCAAAT ATTAAAAAAA AAAC

Translated Amino Acid Sequence Contig-U13906-1

TLTIIEQSLEELKNQENKKKSSTSSTTTTTATTTIEWKSKSIKVDEKLDEKLKIFNEFKK
ENENKLPKNINASIDTTSNISPIFNIYDKLVYNLINCETIVKNDLSTLVRVNLKNKSVKS
EIEEQSTRILLAYIMYHKMKYLYERNSILITMMQRVLDGEKVDESAIKKKVKKVTWNDLV
RLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLILLKSIRLYYIAVCLAKSLKFSETMAV
LDRVLTNIQNVRKTNTKNQQILNDTNELESNIKKQRSQIHANSFIQQLSENQDLKNQMSS
LSIGGITTASGKSNDLISGLDSFDTSFLTEKKLVQLPPQLQPVQAKPIFFDLAFNSVTFP
SLDQRKKGSSTGTPSKGLFGFWGRG*nflilkiiitknkkinn*pnikkk

Homology Contig-U13906-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Conti...  1867  0.0
Contig-U01172-1 (Contig-U01172-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11670-1 (Contig-U11670-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U11214-1 (Contig-U11214-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U11147-1 (Contig-U11147-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U09729-1 (Contig-U09729-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U08154-1 (Contig-U08154-1Q) /CSM_Contig/Conti...    36  0.087

Homology Contig-U13906-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ341887) Dictyostelium discoideum cDNA clone:dda8h15, 3' e...  1287   0.0    1
(BJ381483) Dictyostelium discoideum cDNA clone:ddc41m13, 3' ...   785   0.0    1
(BJ367176) Dictyostelium discoideum cDNA clone:ddc41m13, 5' ...   591   0.0    3
(AU261437) Dictyostelium discoideum vegetative cDNA clone:VS...   593   e-165  1
(GR580837) CBZY865.b1 CBZY Dictyostelium purpureum 18 hr sta...    62   3e-29  4
(GR580838) CBZY865.g1 CBZY Dictyostelium purpureum 18 hr sta...    52   2e-12  3
(AC141676) Apis mellifera clone CH224-55I24, WORKING DRAFT S...    56   0.003  1
(DB777784) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(DB769753) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(DB761610) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1

Homology Contig-U13906-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC152635_1(BC152635|pid:none) Danio rerio signal recognition par...    83   2e-14
BC146623_1(BC146623|pid:none) Xenopus laevis hypothetical protei...    68   8e-10
AF195951_1(AF195951|pid:none) Homo sapiens signal recognition pa...    67   1e-09
AK027322_1(AK027322|pid:none) Homo sapiens cDNA FLJ14416 fis, cl...    67   1e-09
A58947(A58947;S12981) signal recognition particle 68K protein - ...    65   5e-09
AJ720601_1(AJ720601|pid:none) Gallus gallus mRNA for hypothetica...    65   6e-09
AL645861_2(AL645861|pid:none) Mouse DNA sequence from clone RP23...    64   1e-08
AL645861_1(AL645861|pid:none) Mouse DNA sequence from clone RP23...    64   1e-08
(Q9VSS2) RecName: Full=Signal recognition particle 68 kDa protei...    63   2e-08
(Q8BMA6) RecName: Full=Signal recognition particle 68 kDa protei...    62   3e-08