Dictyostelium discoideum cDNA Contig-U13905-1

Assembled

Chromosomal Location of Contig-U13905-1

Sequence Contig-U13905-1

AAATAAAAAT AATAAAAACA AAAATAAAAA TAAAAAAATA CCATCATTAT
TTATTTTATT GATTTATATT AATTTATTAT TTATTATAAT AAAATGAAGA
ATCTAATATT TTTTAATATA TTAATTTCAA TTTTTATAAT TGGGATAAAT
TGCCAGTTAG ATCCAATAAT TATTAAAGGA TCAAATTTTA CAAAAGATTC
AATAACTTAT ATATTTGATA AAAATAGTAA TTATTTTTCA AAATGGGAAT
TTACAGATGT AGATTTACCA TTTTCTTGTA CAAATAATAC AGTTATTAGA
ACTTGTGGTT GGTTCTGTTA ATGAAACAAT AGTTAAGAAA TTTAAAGGTC
AAATTTTAAA TTGTATTACA AGTACAAACG GAGCATCTGA ATGTAATTCA
TTTTTGTGGA AAGATTATTA TCCACAACCA ATAATAGATG GTGAATTTAA
ACCACCTACT AAAGGTGGTT ATGTTAATAT TCAAGGATAT TATTTAGTTT
TTGGTATTAC AAAATTTACT ATCCTTCCTT CAACAAAGGT GCCAATTATT
GGTGATCTTG AATCTTCAAC AATTGATATT ACAAACTTAA CTCTTGATTA
TAAAGGAGGT TGTGGTCCTA GAACATTCAC TTGGCCAAAT AATTTCAACT
ATACATTTAA TCATCAAAAA CCAAACATTT CAAGTGTTTC ATCAAGTGAT
ACTAAAATAA TTGCAAATGG ATCAAACTTT TGTAACATTA TAGATTATGT
AACAATTTTC ATAGAGGGTA TCAAAATTGA TAAATCTAAT ATAACTCTAA
TTGATCATGA AATTTTTGAA ATAGCATACA TCCAACCATA TAGTAAATCA
GTATCATTGC ATATAATATC TGGTGGCTTA GGATCCAATC ATGTTTCATT
TGATTATAAA CCAATTTTAA ACAGTGCCAA TAGTGTTTCA AAAAAGTATG
GTGGTCTAAT AACAATAACA GGTTCAAGAC TATCTCCACC ACCATCATTG
CTAGCCAATT CGACTATACT TGTTAAAATT GGTACATATG ATTGTAAAAA
TGTAACATTT ATAAATCAAC AATTAATTTG TAGAATTGAT CCTATTATTA
ATAATGGTGA TTCAGTTAAT TTACCTATCA AATTAACCAT TAATTCAATT
TCAAATGAAA ATAAATTACT ATTCTCATTT GATCAACCTA TTATAACAAA
CATAATAATT ATACAAGGTG AAGTGAAACT ATCTGGTAAT TTCTTTGGTA
CAAATGAAAC TACTCAAATA TTTATTGATG ATGTTCAACA AACTAATTTA
AAAATTCTTG TTAATGAAAA TCAAACTTCA ATTTTATTTA AACCAAATCA
AATAACAAAA TCAAAAATAA ATGTAGTTGT AAATGGTTTA AAATCAAACA
TTGCTGAAAT AACCTCTCCA TTTTATTCGA TACAAAATCC AGCATCTCCA
TCTGTAAATG GTCAAATTGT AAATTTCACA CTTTATAATA TAAATCCATT
AAATTATAAT TCAACACCAA TAATTACACT ACAATCTGAT AATAGTAAAA
TCACTGGTAT TGATTTAAAA AACTCTACTG ATTTCTCAAA ACATACATAT
TCATTTACAA TTCCAAAAGG GTGTGGTAGA AATGGATTTT TGATATCAAT
GGGTAATGAT ACAATTCATT CAGAATTTAA TTACAATTTA CCAATTGTTA
ATAATTGTTC AATTGGAAAT AATCAAATGA TTGAATGTGT TGGTCAATAT
CAAGATTTTA TTGATTTATA TAAAAGTGGT AAAATTAAGA TTATTTTTTC
AAATTCAATA ATTGTTGATA ATGTTGCAAA TATATCAATC AAATTTACAA
ATTCATTAAT TTCATTCCCA TTGAAACCAG AGTATGGATC TAGTGAATTT
AAACTTGAAG GTTTGTAATG AATTCACAGT ACCATTAAAA GTTGATATCT
CACCAAGTGT TGACTATTTT CAAACAAATC CAATTTTTAA TTCAACAGGT
GGCTCAATTT TAATTATTGG TAAAAACTTT GTAAAAGAAA CAATTGAAAA
TTCTCACCTT CATTGTGTTA CCAATAATTT AGATTATAAT TGTACATTTA
TAAATTTCTC AACAATTTCT TGCCAAATGA ATATTAATGG GCCCAAATGA
TCTAATATTT GGAAGTTGTA TTTAATAATT AAACATGAAA ATATCTCAAT
TAAATTTTAC CCAACCATTA GTTTTAATTA CTACAATTTC AAAATCAACT
GGTTTAGTAA TAATTACAGG AAATGAATTT TATAAACAAA TTGATTATAT
TTCAATTGGA TATTATAATT GTTCAAATAT TTCATTTATA AATTCATCAT
GTATAACTTG TTTAGTTGAA CAACAAACAA ATTTAATAAT TGATAAATTA
TTATTTGTAA ATGTAATAAT TAATGGTAAA AGTGGTGGAA AGGAATTAAC
AATATATAAT CATGATTTAT TATTTTCAAA TAATAATAAT AATAATTATA
ATAATAATAG TATTGGTGGT GAAAATAATA ATTCTAAAAT TTCGAAAAAT
GTTCAAAAAG GTTTTATTGA AAAGAATGGT TGGGTAATAG CAATAATTGT
AATAGGTGTA ATTTTAGTTG TTGGATTAGT ATTAAATATT AAATTTAAAT
TGTATAGTAA AACTTCAAGA ATTTTATTAA AAAATAGAAT AAAGAAAAAT
TTTAAAAAGA ATAAACCTAC AAAGAAATCA AAGAATGGTA ATTCAATAAA
TCAATCAAAT GATAATATAT TACATTCATC AATTGATTCA ATGTCATCAC
CTCCATTACC TCCACCACAA TCAAGATTAC AACCATCAAT TTCACCAATC
AATAGTATTG ATGATTTTGA TAGTAAATCA ATATATGCTG ATCAATTAGT
TTAAAAATTA AGAATTTTAA AAAAAAAAAA ATAAAAAATA AAAAAATCAA
TATATTTTAA AAAAATTGTA TGTGAATATA TAATTATATA TTTATAAAAA
AA

Translated Amino Acid Sequence Contig-U13905-1

nknnknknknkkipslfilliyinllfiiik*ri*yfliy*fqfl*lg*ias*iq*llkd
qilqkiq*liylikiviifqngnlqm*IYHFLVQIIQLLELVVGSVNETIVKKFKGQILN
CITSTNGASECNSFLWKDYYPQPIIDGEFKPPTKGGYVNIQGYYLVFGITKFTILPSTKV
PIIGDLESSTIDITNLTLDYKGGCGPRTFTWPNNFNYTFNHQKPNISSVSSSDTKIIANG
SNFCNIIDYVTIFIEGIKIDKSNITLIDHEIFEIAYIQPYSKSVSLHIISGGLGSNHVSF
DYKPILNSANSVSKKYGGLITITGSRLSPPPSLLANSTILVKIGTYDCKNVTFINQQLIC
RIDPIINNGDSVNLPIKLTINSISNENKLLFSFDQPIITNIIIIQGEVKLSGNFFGTNET
TQIFIDDVQQTNLKILVNENQTSILFKPNQITKSKINVVVNGLKSNIAEITSPFYSIQNP
ASPSVNGQIVNFTLYNINPLNYNSTPIITLQSDNSKITGIDLKNSTDFSKHTYSFTIPKG
CGRNGFLISMGNDTIHSEFNYNLPIVNNCSIGNNQMIECVGQYQDFIDLYKSGKIKIIFS
NSIIVDNVANISIKFTNSLISFPLKPEYGSSEFKLEGL**ihstiks*yltkc*lfsnks
nf*fnrwlnfnyw*klckrnn*kfspslcyq*frl*lyiykflnnflpney*waqmi*yl
evvfnn*t*kyln*ilpnh*f*llqfqnqlv***lqemnfinkliifqldiiivqifhl*
ihhv*lv*lnnkqi**linyyl*m**lmvkvvern*qyiimiyyfqiiiiiiiiiivlvv
kiiilkfrkmfkkvllkrmvg**q*l**v*f*lld*y*ilnlncivklqefy*kie*rki
lkrinlqrnqrmviq*inqmiiyyihqliqchhlhylhhnqdynhqfhqsivlmilivnq
ymlin*fkn*ef*kkknkk*knqyilkklyvni*lyiykk

Homology Contig-U13905-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13905-1 (Contig-U13905-1Q) /CSM_Contig/Conti...  2357  0.0
Contig-U05162-1 (Contig-U05162-1Q) /CSM_Contig/Conti...    44  9e-04
Contig-U02891-1 (Contig-U02891-1Q) /CSM_Contig/Conti...    44  9e-04
Contig-U09694-1 (Contig-U09694-1Q) /CSM_Contig/Conti...    40  0.014
Contig-U05087-1 (Contig-U05087-1Q) /CSM_Contig/Conti...    40  0.014
Contig-U13274-1 (Contig-U13274-1Q) /CSM_Contig/Conti...    38  0.054
Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Conti...    38  0.054
Contig-U11185-1 (Contig-U11185-1Q) /CSM_Contig/Conti...    38  0.054
Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Conti...    38  0.054

Homology Contig-U13905-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ394359) Dictyostelium discoideum cDNA clone:dds34g21, 5' ...  1001   0.0    2
(BJ324813) Dictyostelium discoideum cDNA clone:dda8l05, 5' e...   670   0.0    2
(BJ353902) Dictyostelium discoideum cDNA clone:dda51g20, 3' ...   543   0.0    7
(BJ353205) Dictyostelium discoideum cDNA clone:dda49g12, 3' ...   456   0.0    5
(BJ355887) Dictyostelium discoideum cDNA clone:dda58e16, 3' ...   456   0.0    7
(BJ337740) Dictyostelium discoideum cDNA clone:dda58e16, 5' ...   737   0.0    2
(BJ341785) Dictyostelium discoideum cDNA clone:dda8l05, 3' e...   448   0.0    9
(BJ407204) Dictyostelium discoideum cDNA clone:dds37f19, 3' ...   448   0.0    9
(BJ370869) Dictyostelium discoideum cDNA clone:ddc55c23, 5' ...   898   0.0    1
(BJ395147) Dictyostelium discoideum cDNA clone:dds37f19, 5' ...   585   0.0    2

Homology Contig-U13905-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...  1054   0.0
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...   114   3e-30
AC116982_60(AC116982|pid:none) Dictyostelium discoideum chromoso...   131   1e-28
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   122   8e-26
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   122   8e-26
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...   115   9e-24
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...   115   9e-24
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...   115   9e-24
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS...   115   9e-24
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...   114   2e-23