<Clone: Contig-U13870-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U13870-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U13870-1

< more Chromosomal info >

Chromosome Number 4
Length 5430582
Start Poin 1,910,334
End Point 1,909,173
Strand MINUS

Sequence Contig-U13870-1

ATTCTTTTTT TTTAAACTGT TTTAAATAAT TTTTTAAAAA AATGATTAAA
AATGATAATA AACCATTTAT ATTTTTTAGT TTTTGTGGAC AAGCATTACA
AACAAAAACA TTAGCACTTG ATCTATATAA TGGAAATAAA GTTTTTAAAG
AATCAATGGA TAAACTTGAC TGTTTTATTA AAAATAAATA TTTTAATGGG
GAATCAATGC TAAACAAATT AAGAACTCAG CCAGATGATG CAATCCCAAA
TAGAGATCAA TTTGTTGTTC ATTCATTTTT ATTCATGTTT CAAGTATCAA
TTTTTGAATT ATTAAAAAGT GAAGGAATAT CTCCGTCTGT AATTTTTGGA
ACAAGTTGTG GAGAAATATC AGCAGCATAT TGTTCAGGAA CACTTGATTT
AGAAACTGCT TGCGATATTT CATTTTTTAG AGCATCAATG ACATCAAAGG
TAAGATCATT AAATGCACCT GCAAAATTAA TTGGAATTGA TATTAGTTGT
GAAGAATACA ATAGACTATT TTCAGAGAAA TATCCAAATG TTGAAATGGC
AGCAATATTA TCACCAAAAC ACGTTTATGT TGGATGTGGT GACATAGAAC
AAGTTGATAG ACTCTATGAT GATGTATTGA AACAAGGATA TCAAGTAAAA
AGTTATCCTG CACAAATTGC ATTTCACACT AGTGCAATGG ATTGTATAAT
AAAAGATGAT GTTTTAAAAC AGATATTCAT ACCAAAACCA TCAGCAATAC
CATTATTCTC GAGTGTAACT GGTGAAATGT TTAATAATAG TTCATTAAAA
TTTGATCAAA ATTATCTTTT TAAAAATCTT AGAAATACAG TCCAAAATGT
TAAAACTCAT CATAATATTT TTAAATTTAT TGAAGAAAAT GGAGGAACAA
ATGTTATCGT AGTAGAAATA TCACCAAATC CAACAATGAT CCCAACTATT
AAAGAATCAT TAAAAACCAT AGATTCAAAA TTGTTTAATT CTTTGCGTGA
AAATTACAAA AACAATATAA CTTTTTTACC AACACTTGAA AGATCAAAAA
ATGATATCAT ATCAATTAAT GAAAACAATT TCAGAAATTA AAAAACTCTT
TTAAAATTTT AATAATAATA AGTAATATTT AATATTTAAT ATATCCATTA
AAAAAAAAAA

Translated Amino Acid Sequence Contig-U13870-1

<All Frames> 
sfflncfk*FFKKMIKNDNKPFIFFSFCGQALQTKTLALDLYNGNKVFKESMDKLDCFIK
NKYFNGESMLNKLRTQPDDAIPNRDQFVVHSFLFMFQVSIFELLKSEGISPSVIFGTSCG
EISAAYCSGTLDLETACDISFFRASMTSKVRSLNAPAKLIGIDISCEEYNRLFSEKYPNV
EMAAILSPKHVYVGCGDIEQVDRLYDDVLKQGYQVKSYPAQIAFHTSAMDCIIKDDVLKQ
IFIPKPSAIPLFSSVTGEMFNNSSLKFDQNYLFKNLRNTVQNVKTHHNIFKFIEENGGTN
VIVVEISPNPTMIPTIKESLKTIDSKLFNSLRENYKNNITFLPTLERSKNDIISINENNF
RN*ktllkf****vifni*yih*kkk


Homology Contig-U13870-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U13870-1 (Contig-U13870-1Q) /CSM_Contig/Conti...  2111  0.0
Contig-U06560-1 (Contig-U06560-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U04735-1 (Contig-U04735-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13274-1 (Contig-U13274-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U11919-1 (Contig-U11919-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U11514-1 (Contig-U11514-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U11304-1 (Contig-U11304-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Conti...    36  0.082


Homology Contig-U13870-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ361066) Dictyostelium discoideum cDNA clone:ddc9l15, 5' e...  1088   0.0    1
(BJ340874) Dictyostelium discoideum cDNA clone:dda4a10, 3' e...   573   0.0    5
(C89802) Dictyostelium discoideum slug cDNA, clone SSG173.        724   0.0    2
(BJ323988) Dictyostelium discoideum cDNA clone:dda4a10, 5' e...   963   0.0    1
(BJ374656) Dictyostelium discoideum cDNA clone:ddc9l15, 3' e...   591   e-164  1
(AU073115) Dictyostelium discoideum slug cDNA, clone SSG173.      430   e-116  1
(BJ391570) Dictyostelium discoideum cDNA clone:dds24m09, 5' ...   190   9e-44  1
(BJ403214) Dictyostelium discoideum cDNA clone:dds24m09, 3' ...   151   7e-32  1
(BJ327293) Dictyostelium discoideum cDNA clone:dda19m19, 5' ...    48   7e-06  3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.002  17


Homology Contig-U13870-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


(Q54QD1) RecName: Full=Probable polyketide synthase 23;         ...   204   4e-51
(Q54KU5) RecName: Full=Probable polyketide synthase 24;         ...   191   6e-47
(Q54KU3) RecName: Full=Probable polyketide synthase 25;         ...   189   1e-46
(Q55DM7) RecName: Full=Probable polyketide synthase 2;          ...   183   9e-45
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   181   4e-44
(Q54ED6) RecName: Full=Probable polyketide synthase 41;         ...   177   5e-43
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   175   3e-42
(Q54TW0) RecName: Full=Probable polyketide synthase 18;         ...   171   3e-41
(Q54FD2) RecName: Full=Probable polyketide synthase 38;         ...   171   3e-41
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   170   8e-41


<Clone: Contig-U13870-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home