Dictyostelium discoideum cDNA Contig-U13867-1

Assembled

Chromosomal Location of Contig-U13867-1

Sequence Contig-U13867-1

AAAAAAAAAA CAATGAATGA AAATAAACAA AAAACTACAA ATACAATAGA
AACAAAAGAA ATAAATCCAA TAGTACCTCC TCCTCCACCA CCAATTACAG
CAGAAACAAC AGCACCAGCA AAAATACAAC CACCTCCAAC ATCAACTACA
AAAGCAAATA CAACAACAAC AACAACAACA ACAACAACAA CAAAAGAAGC
AGCATCATCA TTATCAATTT TAGCACCATT AAATTTAAAT GAAATAGATG
AAAATAAAAT AAAATTTAAT AAAGATGGTG ATAAAACATA TTTTTCAGAG
AAAGATAATA CTCATTATAT TTATAATACA CATAGTAAAC AATGGTTAGC
AGAGATAACT AAAGATATGA TGAATTCACA ACAATCGGTA TACCAGAAAA
AGGTAGAGAA AAGAGATTTA ACACAAGAAC AAATTGATAA TATCTCTGAT
TTACATATTT CTGGTATACC TATGGATGGT TCAATAAGAG AGTTACAAAT
ATCAAATTAT CTAAAGAAAT GTGGTTACAT TAAAAAGAAT GAATATGGTA
GACCAATCAT TAGTCTTTTA GTTGATAATG AAAATCAATT CACTGGTTGT
GCTTTAGTTT CATTTGAACG TAAAGAATCT GTTCCAATTG CAATTTTACA
ATATGATGAA ACTGAAATCT CTCCAAATAA TATAATTAGA ATAAGAAAAG
CAACACTTGA AGAATCAAAA CTACATTTAG TAAATGAAAA AAGTAATAAA
AAACAAAAGA AATCACATAA AGATAGAAGG AGTGAATATG AGAATGAAGC
AAAATATGGT TGGGCAGATT CAGAGAGTAA AACAGTGATT ATAAAGAATT
TATTCTCACC AGAGGAAGCA ATGGTGGATC CAAACTTTTT TAATGATCTT
CAAGCAGATT TAGAGGATGA AACCCATGGT TGTGGAAAAT GTGGTCCAAT
CTCTTCGATT CACATCTTTG AGTATAATCC AGATGGTGTT GTATCTGTAA
AATTTTCTGA ATTTGAATCT GCTAAGAAAT GTGTAGCCTT AATGAATGAT
CGATTCTTTG GTGGAAGGAA ATTATCTGCT GATTTCTATG ATGGTTATTC
AAATTATTAT GTTGAAGAAA CTGATGAAAA TAAAGAAAAA CGTCTCAAGA
AATGGGAATC TTATATAAAT AAATAATCTA CCCAGCACAC ACAAAA

Translated Amino Acid Sequence Contig-U13867-1

KKKTMNENKQKTTNTIETKEINPIVPPPPPPITAETTAPAKIQPPPTSTTKANTTTTTTT
TTTTKEAASSLSILAPLNLNEIDENKIKFNKDGDKTYFSEKDNTHYIYNTHSKQWLAEIT
KDMMNSQQSVYQKKVEKRDLTQEQIDNISDLHISGIPMDGSIRELQISNYLKKCGYIKKN
EYGRPIISLLVDNENQFTGCALVSFERKESVPIAILQYDETEISPNNIIRIRKATLEESK
LHLVNEKSNKKQKKSHKDRRSEYENEAKYGWADSESKTVIIKNLFSPEEAMVDPNFFNDL
QADLEDETHGCGKCGPISSIHIFEYNPDGVVSVKFSEFESAKKCVALMNDRFFGGRKLSA
DFYDGYSNYYVEETDENKEKRLKKWESYINK*stqhtq

Homology Contig-U13867-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13867-1 (Contig-U13867-1Q) /CSM_Contig/Conti...   882  0.0
Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12034-1 (Contig-U12034-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U11235-1 (Contig-U11235-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U12577-1 (Contig-U12577-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U12065-1 (Contig-U12065-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U11314-1 (Contig-U11314-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U10345-1 (Contig-U10345-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U10004-1 (Contig-U10004-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U14861-1 (Contig-U14861-1Q) /CSM_Contig/Conti...    34  0.33

Homology Contig-U13867-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ409225) Dictyostelium discoideum cDNA clone:dds40f02, 3' ...   567   0.0    2
(BJ428614) Dictyostelium discoideum cDNA clone:ddv12i14, 3' ...   595   0.0    2
(AU033697) Dictyostelium discoideum slug cDNA, clone SLB328.      844   0.0    1
(BJ340871) Dictyostelium discoideum cDNA clone:dda4a07, 3' e...   474   0.0    2
(BJ378923) Dictyostelium discoideum cDNA clone:ddc33c08, 3' ...   712   0.0    2
(AU060743) Dictyostelium discoideum slug cDNA, clone SLB328.      355   e-127  3
(AC107636) Mus musculus clone RP23-29I19, WORKING DRAFT SEQU...    40   0.093  7
(CG841023) Ynhw1637 HW-YUBAC Bos taurus genomic clone HW-YUB...    40   0.14   3
(AC009924) Homo sapiens clone RP11-114H16, WORKING DRAFT SEQ...    38   0.65   7
(CU137682) Zebrafish DNA sequence from clone DKEY-197A14 in ...    48   0.83   1

Homology Contig-U13867-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC090381_1(BC090381|pid:none) Xenopus tropicalis HIV TAT specifi...   130   7e-29
BC160527_1(BC160527|pid:none) Xenopus tropicalis HIV TAT specifi...   127   6e-28
BC084628_1(BC084628|pid:none) Xenopus laevis hypothetical protei...   127   1e-27
AK011234_1(AK011234|pid:none) Mus musculus 10 days embryo whole ...   123   1e-26
AJ720151_1(AJ720151|pid:none) Gallus gallus mRNA for hypothetica...   123   1e-26
(Q8BGC0) RecName: Full=HIV Tat-specific factor 1 homolog;  &AK04...   123   1e-26
(Q5RB63) RecName: Full=HIV Tat-specific factor 1 homolog;  &CR85...   122   2e-26
AB210480_1(AB210480|pid:none) Ciona intestinalis Ci-HTATSF1 mRNA...   122   2e-26
BC112690_1(BC112690|pid:none) Bos taurus HIV-1 Tat specific fact...   121   4e-26
AM270165_80(AM270165|pid:none) Aspergillus niger contig An08c010...   117   6e-25