Dictyostelium discoideum cDNA Contig-U13852-1

Assembled

Chromosomal Location of Contig-U13852-1

Sequence Contig-U13852-1

AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA AAATCAACAA
CAACAAGCAC CACCACAACA ACAACAAGCA CCACAACAAC AACAACAACA
AAATACACAA TTTAAAAACA AAACGGGACA ATCAGATATT AATGATGTTC
AAGATTCATT ATCACAACTT AATATTAAAC AACAACAACA ACCACCACAA
CAACCACAAC AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA
ACAACAACAA CAACAACAGC CACAAGCAGA TTTGGATGAT AGTAAAAATA
ATGAAACCTT TGATAACTCC TCAAATCTTT ATNCAGGTAC TTTAGCAGAA
ATATCGACAA TATCTAGAAT CAATGATGGA ACTTATCAAC AACAACATCA
ACAACAACAA CAACAACAAT ATCATCAACA ATCCCATCAA CAATCTCATC
AACAATCTCA ACAACAATCA CAACAATCTC AACATCACCA TCAACAACAA
CCACAACCAC AACCACAACC ACAACCACAA CCACAACCAC AACCACAACC
ACAACCACAA CCACAACCAC AACCACAACC ACAACCACAA CCACAACAAC
AACAACCACA ACACCAATCA CAACAACACC AACCACAACC ACAACAACCA
CAACAACGAC AACAACCACA ACACCAACCA TATCATCAAC AACAATCATA
CCAACAACAA CAACAACAAC AACAACAACA ATATCAACAA CAGCAACAAC
AGCAACAACA ACAATATCAA CAACAACAAA TGTCACAAAA TCAAAATCAA
AATCAATCAC AACAACAACA ACAATCAGGT CAATTAGGAT TTGAAGAAGC
AATGATACTA ACAAGACATA TGATGGATAT AAGTTTTAAA AATCTACCAG
ATTTTAAAGA TTACGAAAGA ATACCAACAT TTATACCCAG AAATCCAAAA
CCTGTACCAC AATATTATCC ACAATCAACT TTACCATTAT TTGAATCACC
AAACGTTTTT GAGAAATTTG ATATCGATAC CTTGTTTTTC ATTTTCTATT
TCAAACAAGG AACTTATCAN CAATATCAAG CAGCTAAAGA ATTAAAGAAA
CAAGGTTGGA GATATCATAA AAAATATCTC ACCTGGTTTA GAAGACATGA
AGAACCAAAA GAAATCACAA ATGAATTCGA ACAAGGTACC TATGTTTATT
TTGATTATGA AACTGGTTGG TGTCAAAGAA AGAAAACAGA GTTCACTTTT
GAATATAGAT TTTTAGAAGA GTAAATAAAT AAATAATTTA ANTAAAAAC

Translated Amino Acid Sequence Contig-U13852-1

QQQQQQQQQQQQQNQQQQAPPQQQQAPQQQQQQNTQFKNKTGQSDINDVQDSLSQLNIKQ
QQQPPQQPQQQQQQQQQQQQQQQQQQQQQPQADLDDSKNNETFDNSSNLYXGTLAEISTI
SRINDGTYQQQHQQQQQQQYHQQSHQQSHQQSQQQSQQSQHHHQQQPQPQPQPQPQPQPQ
PQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQRQQPQHQPYHQQQSYQQQQQQQ
QQQYQQQQQQQQQQYQQQQMSQNQNQNQSQQQQQSGQLGFEEAMILTRHMMDISFKNLPD
FKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEKFDIDTLFFIFYFKQGTYXQYQA
AKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQGTYVYFDYETGWCQRKKTEFTFEYRF
LEE*ink*fx*k

Homology Contig-U13852-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...   924  0.0
Contig-U14141-1 (Contig-U14141-1Q) /CSM_Contig/Conti...   184  2e-46
Contig-U10358-1 (Contig-U10358-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11453-1 (Contig-U11453-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12475-1 (Contig-U12475-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11487-1 (Contig-U11487-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U09476-1 (Contig-U09476-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Conti...    36  0.092

Homology Contig-U13852-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ356031) Dictyostelium discoideum cDNA clone:dda59c05, 3' ...   626   e-175  1
(AU053048) Dictyostelium discoideum slug cDNA, clone SLF577.      418   e-112  1
(BJ325871) Dictyostelium discoideum cDNA clone:dda2p18, 5' e...   176   3e-63  2
(BJ369186) Dictyostelium discoideum cDNA clone:ddc49k17, 5' ...   218   4e-52  1
(BJ356541) Dictyostelium discoideum cDNA clone:dda60l13, 3' ...   186   2e-42  1
(DV150413) CV03082B2G01.f1 CV03-normalized library Euphorbia...    50   1e-07  2
(DV133107) CV03065X1B09.f1 CV03-normalized library Euphorbia...    50   1e-07  2
(ES758015) C20L_12_F09_E002.g1 USDA-Tifton Peanut Library C2...    56   0.004  1
(ES625224) NGPQ634TR NGPP Nasonia giraulti cDNA, mRNA sequence.    40   0.012  2
(EV420904) 210788131 NGP Nasonia giraulti cDNA clone 159C11 ...    40   0.012  2

Homology Contig-U13852-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC115599_19(AC115599|pid:none) Dictyostelium discoideum chromoso...   318   4e-85
CR382131_272(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   172   3e-41
(O13870) RecName: Full=General negative regulator of transcripti...   170   9e-41
AM470429_4(AM470429|pid:none) Vitis vinifera contig VV78X191569....   170   1e-40
(Q8K0V4) RecName: Full=CCR4-NOT transcription complex subunit 3;...   162   2e-38
BC166211_1(BC166211|pid:none) Xenopus tropicalis hypothetical pr...   162   3e-38
(O75175) RecName: Full=CCR4-NOT transcription complex subunit 3;...   161   4e-38
AB014591_1(AB014591|pid:none) Homo sapiens mRNA for KIAA0691 pro...   161   4e-38
AC167711_23(AC167711|pid:none) Medicago truncatula chromosome 7 ...   160   7e-38
AB012246_18(AB012246|pid:none) Arabidopsis thaliana genomic DNA,...   159   2e-37