Dictyostelium discoideum cDNA Contig-U13824-1

Assembled

Chromosomal Location of Contig-U13824-1

Sequence Contig-U13824-1

CTGTTGGCCT ACTGGNAAAA AAAAGTTTTA AAAACAAATT CACTATTTAT
TTTTATTTGT ATAGTATTTC TATTTTATTT TTAAAATAAT TTATTTTTAT
CCTTAAAATT GTATTATAAA ATTAGTATAA TATAATGTAT TCATCAGGAC
CATCTGGTTT ATATAATGCA CCAGTTACTA AGGTGTTACT ATTTGGATCA
TTTGCTGTCA ATTTAAGTGT AAATTATATG ATTAAAAAAG GAGGAGTGAC
AGCATCATTA GGAAATGGCA TTCAATCATT TATATGTAAT CAATTTTTAT
ATAATAATTT ACCAGAGATG TTATTTGGTG TAATGTTTAT ATATTCATTT
AGGTTATTTG AAAGAGTTAT GGGTTCATCA AAATATGCCC TCTTTTATTT
CACTACCACT GGTATCTCTG CATTAATTCA ATTAGCAATT AATGTTTTAA
CAAATTCAAA TGGTAAATTA TTTAAATCCT CACCATTTTC ATTTATTTTT
TCATGTTTAG TCTTATATTA TAAAGATGTA CCATCAACAA TGTGGTTTAA
ATTATTTAAA ATACCATTAT CAGATAAGAT GATAACATAT GGATTAGCAG
CACAAACATT ACTTGGATTT CCAAGTAATA TTAATTCAAG TTTAATTGGT
ATTGTAAGTG GTGTAGTTGC AAGTTCTAAA ATTTTAGGAT TACCAAATTT
GAATATACCA ANAGGTGTAA GTTCATTATT TTCAAGATTA TTCTTACCAT
TACTTCAATC TGCACCACCA ACAACCTCAT ATAGATCAAC ATTGGAAAGA
AATCAAAGAC AAAGACAAGC AACCATGGGN GCCGATAATC CATTATATGC
TTTTCAACAA CAATTACAAC AATTACAACA ACAACAACAA ATACATCAAC
AACCAACAAT CCCACCAACT CCACCATCCG AAGAGAATAT TCAAATTTTA
GAAAATATGG GCTTTCCAAG ATCACGTGCN ATCGAAGTTT TAACAAGAAA
NAAAAAAAAA

Translated Amino Acid Sequence Contig-U13824-1

vgllxkksfknkftiyfylysisilflk*fifilkivl*n*YNIMYSSGPSGLYNAPVTK
VLLFGSFAVNLSVNYMIKKGGVTASLGNGIQSFICNQFLYNNLPEMLFGVMFIYSFRLFE
RVMGSSKYALFYFTTTGISALIQLAINVLTNSNGKLFKSSPFSFIFSCLVLYYKDVPSTM
WFKLFKIPLSDKMITYGLAAQTLLGFPSNINSSLIGIVSGVVASSKILGLPNLNIPXGVS
SLFSRLFLPLLQSAPPTTSYRSTLERNQRQRQATMGADNPLYAFQQQLQQLQQQQQIHQQ
PTIPPTPPSEENIQILENMGFPRSRAIEVLTRXKKK

Homology Contig-U13824-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13824-1 (Contig-U13824-1Q) /CSM_Contig/Conti...  1449  0.0
Contig-U11059-1 (Contig-U11059-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13395-1 (Contig-U13395-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U09255-1 (Contig-U09255-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U14104-1 (Contig-U14104-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U13607-1 (Contig-U13607-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U11324-1 (Contig-U11324-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U08145-1 (Contig-U08145-1Q) /CSM_Contig/Conti...    36  0.071

Homology Contig-U13824-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ387589) Dictyostelium discoideum cDNA clone:dds3f15, 5' e...   928   0.0    1
(BJ402193) Dictyostelium discoideum cDNA clone:dds20e20, 3' ...   785   0.0    3
(BJ325541) Dictyostelium discoideum cDNA clone:dda1f12, 5' e...   743   0.0    2
(AU270530) Dictyostelium discoideum vegetative cDNA clone:VS...   741   0.0    1
(BJ342720) Dictyostelium discoideum cDNA clone:dda1f12, 3' e...   618   0.0    2
(BJ399002) Dictyostelium discoideum cDNA clone:dds3f15, 3' e...   295   e-158  3
(BJ389988) Dictyostelium discoideum cDNA clone:dds20e20, 5' ...   408   e-109  1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    40   0.003  14
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    36   0.004  8
(DJ387355) Diagnosis of Diseases Associated with Apoptosis.        48   0.027  3

Homology Contig-U13824-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AK227952_1(AK227952|pid:none) Arabidopsis thaliana mRNA for hypo...   107   9e-22
BT033386_1(BT033386|pid:none) Zea mays full-length cDNA clone ZM...    96   3e-18
EF530199_1(EF530199|pid:none) Hieracium piloselloides putative u...    88   4e-16
AP008207_2834(AP008207|pid:none) Oryza sativa (japonica cultivar...    85   5e-15
BT068560_1(BT068560|pid:none) Zea mays full-length cDNA clone ZM...    84   8e-15
AC150889_8(AC150889|pid:none) Medicago truncatula chromosome 7 c...    80   9e-14
BT052409_1(BT052409|pid:none) Medicago truncatula clone MTYFD_FE...    80   9e-14
AM920437_479(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    74   8e-12
AM270076_1(AM270076|pid:none) Aspergillus niger contig An04c0150...    67   8e-10
FN317731_1(FN317731|pid:none) Schistosoma japonicum isolate Anhu...    63   2e-08