<Clone: Contig-U13721-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U13721-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U13721-1

< more Chromosomal info >

Chromosome Number 1
Length 4919822
Start Poin 1,904,945
End Point 1,905,902
Strand PLUS

Sequence Contig-U13721-1

ATCAATTTTA GTATTTATAT CATATATTTG TGCAAGTTTT GCAGCAAATA
ACAGGATTTA TTTATATTCA ATCACAGCTT TGGCAGTTGG ATTAGGTTTA
ACTATTCCAT CATTTTTTGC AGCAACAGGT GCAGTTGTTT TAGGTACTGG
TAGAGATAAA TCAACTTGGG ATGTAGAATT ATTTAAATCT GATCAAGTTT
TAATGGGATG GATGTGGCCA AAAGGTCAAA TGGCAATTTT TGTAGATGAA
AGTACAATTA TTGGACCAGA TTCATTTATT GGTAAATTAT CAACAGAAAT
TCTTCAATTA TCATATATCA GTTATTATAT TTGGGGTTAT TTTATGGAGA
TTTATATTTT ATATAATTTA TGGAGATGTC ATTTATCAAA GGACCCACAA
CAACAAAAGA TGATGCCAAT CTGGGATCAA AGATTAAAAA TGTTTATTTG
CTCATGGATT TCAACTTACT TTATAGTGTT TTCTATTAAT TTAATATTCC
CAGCTGTTAG TCCAAGAGTT TATATTGGTA AAACTTTAAA TCTCTATAAC
AATACCTTGG AGGGTTTTGG TTTCGCTGGT TTTGTACGTA GTAGAATTGA
TAATGCAGCA AAAGGTTCAT TTGGTTCATT CCCTTCTGGT CATATAGCAC
AACTTCATTT GCAATTGGTT TATCAAGTTA TAAGATTTTA CCCGCTTATG
GTTTCGTTTC AACAATTGCT GCAATCTTAA TCGCAATTGC TACAATGTAT
TTACGTTATC ATTACTTTGT CGATTTCTTA GCTGCTTTAC CTGTGACCAT
CTTTTGTTTA TTATATGGTG GTTTCTATAC ACCTTCCGAC TTTAAAAATG
TTTTTGTAAA TTGTTTTTAC TCGATAAAAT CAATCTTTCA AAATATTTTA
TCAAAATTTA ATAATAAATA ATAAATCTAT TTAAAAAATA AAAAAAAAAA
AAAAAAA

Translated Amino Acid Sequence Contig-U13721-1

<All Frames> 
SILVFISYICASFAANNRIYLYSITALAVGLGLTIPSFFAATGAVVLGTGRDKSTWDVEL
FKSDQVLMGWMWPKGQMAIFVDESTIIGPDSFIGKLSTEILQLSYISYYIWGYFMEIYIL
YNLWRCHLSKDPQQQKMMPIWDQRLKMFICSWISTYFIVFSINLIFPAVSPRVYIGKTLN
LYNNTLEGFGFAGFVRSRIDNAAKGSFGSFPSGHIAQLHLQLVYQVIRFYPLMVSFQQLL
QS*sqllqciyviitlsis*llyl*psfvyymvvsihlptlkmfl*ivftr*nqsfkify
qnliinnksi*kikkkkk


Homology Contig-U13721-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U13721-1 (Contig-U13721-1Q) /CSM_Contig/Conti...   993  0.0
Contig-U11360-1 (Contig-U11360-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U13961-1 (Contig-U13961-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U13547-1 (Contig-U13547-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U06795-1 (Contig-U06795-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U00581-1 (Contig-U00581-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U13390-1 (Contig-U13390-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U13280-1 (Contig-U13280-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12338-1 (Contig-U12338-1Q) /CSM_Contig/Conti...    34  0.27


Homology Contig-U13721-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ443267) Dictyostelium discoideum cDNA clone:ddv52m07, 3' ...   521   0.0    3
(C89846) Dictyostelium discoideum slug cDNA, clone SSG254.        444   0.0    2
(AU073146) Dictyostelium discoideum slug cDNA, clone SSG254.      476   e-130  1
(GR569016) CBTF4282.g1 CBTF Dictyostelium purpureum 12 hr ve...    96   2e-55  8
(GR577176) CBXW2242.g3 CBXW Dictyostelium purpureum 6 hr veg...    96   3e-52  7
(CK398375) AGENCOURT_17357154 NIH_ZGC_4 Danio rerio cDNA clo...    38   0.56   2
(CS468880) Sequence 71 from Patent EP1748080.                      42   0.57   7
(CS468879) Sequence 70 from Patent EP1748080.                      42   0.57   7
(CS419357) Sequence 71 from Patent WO2006094836.                   42   0.57   7
(CS419356) Sequence 70 from Patent WO2006094836.                   42   0.57   7


Homology Contig-U13721-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


CP001176_1853(CP001176|pid:none) Bacillus cereus B4264, complete...    39   0.26
CP000001_1779(CP000001|pid:none) Bacillus cereus E33L, complete ...    39   0.26
AE017194_2053(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    39   0.26
CP000133_3352(CP000133|pid:none) Rhizobium etli CFN 42, complete...    38   0.45
CP000227_1869(CP000227|pid:none) Bacillus cereus Q1, complete ge...    38   0.45
CP000853_2167(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,...    37   1.0
CP000271_2150(CP000271|pid:none) Burkholderia xenovorans LB400 c...    35   3.8
CP000806_1021(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    35   3.8
CP000473_5381(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    28   3.9
AF003384_4(AF003384|pid:none) Caenorhabditis elegans cosmid K07B...    35   5.0


<Clone: Contig-U13721-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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