Homology Contig-U13566-1 vs Protein
Query= Contig-U13566-1 (Contig-U13566-1Q) /CSM_Contig/Contig-U13566-1Q.Seq.d
(1071 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC... 49 4e-04
CP000554_2075(CP000554|pid:none) Prochlorococcus marinus str. MI... 43 0.022
AC116989_1(AC116989|pid:none) Dictyostelium discoideum chromosom... 41 0.082
CP000102_568(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 40 0.14
CP000447_298(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 39 0.24
CP000521_519(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 39 0.31
AL844506_276(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.53
CP000980_9(CP000980|pid:none) Borrelia duttonii Ly plasmid pl23,... 38 0.69
CP000077_2071(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 38 0.69
AM460223_1(AM460223|pid:none) Vitis vinifera contig VV78X277016.... 37 0.90
EF460875_71(EF460875|pid:none) Enterobacteria phage phiEcoM-GJ1,... 37 0.90
CP001335_9(CP001335|pid:none) Micromonas sp. RCC299 chromosome 1... 37 1.2
AP009324_411(AP009324|pid:none) Staphylococcus aureus subsp. aur... 37 1.2
AE005176_810(AE005176|pid:none) Lactococcus lactis subsp. lactis... 37 1.2
CP001001_1121(CP001001|pid:none) Methylobacterium radiotolerans ... 37 1.2
CP001100_2056(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 37 1.5
CP001074_1626(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 37 1.5
CP001191_1233(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 36 2.0
CU207366_2841(CU207366|pid:none) Gramella forsetii KT0803 comple... 36 2.0
CP000469_1453(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 36 2.0
CP000053_474(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 36 2.6
CP000825_659(CP000825|pid:none) Prochlorococcus marinus str. MIT... 35 3.4
CP000926_2775(CP000926|pid:none) Pseudomonas putida GB-1, comple... 35 3.4
CP000133_1557(CP000133|pid:none) Rhizobium etli CFN 42, complete... 35 3.4
CP000382_401(CP000382|pid:none) Clostridium novyi NT, complete g... 35 3.4
CP000238_120(CP000238|pid:none) Baumannia cicadellinicola str. H... 35 3.4
DQ127926_1(DQ127926|pid:none) Haemophilus parasuis clone HPS14 u... 35 4.5
U15440_2(U15440|pid:none) Lettuce infectious yellows virus RNA 1... 35 4.5
BX548175_307(BX548175|pid:none) Prochlorococcus marinus MIT9313 ... 35 4.5
AL844509_64(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 33 4.9
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 35 5.9
CP000111_606(CP000111|pid:none) Prochlorococcus marinus str. MIT... 35 5.9
CP000099_1632(CP000099|pid:none) Methanosarcina barkeri str. Fus... 35 5.9
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso... 35 5.9
AM180355_2922(AM180355|pid:none) Clostridium difficile 630 compl... 35 5.9
(Q9JFA1) RecName: Full=Cell surface-binding protein; AltName: Fu... 35 5.9
AF012825_168(AF012825|pid:none) Ectromelia virus strain Moscow, ... 35 5.9
S24675(S24675) P65 protein - Ectromelia virus &Z14256_1(Z14256|... 35 5.9
AE017261_688(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 35 5.9
CP000995_5(CP000995|pid:none) Borrelia recurrentis A1 plasmid pl... 34 7.6
AE016879_1742(AE016879|pid:none) Bacillus anthracis str. Ames, c... 34 7.6
AM285337_4(AM285337|pid:none) Spiroplasma citri GII3-3X chromoso... 34 7.6
AM943837_1(AM943837|pid:none) Peltocephalus dumeriliana partial ... 34 7.6
AE004091_4929(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 34 7.6
CP001407_1809(CP001407|pid:none) Bacillus cereus 03BB102, comple... 34 7.6
EU410304_153(EU410304|pid:none) Vaccinia virus GLV-1h68, complet... 34 10.0
CP000395_425(CP000395|pid:none) Borrelia afzelii PKo, complete g... 34 10.0
(O57211) RecName: Full=Cell surface-binding protein; AltName: Fu... 34 10.0
AL031745_67(AL031745|pid:none) Plasmodium falciparum DNA from MA... 34 10.0
AM285324_8(AM285324|pid:none) Spiroplasma citri GII3-3X chromoso... 34 10.0
(A8G2J5) RecName: Full=tRNA modification GTPase mnmE; E... 34 10.0
(Q58791) RecName: Full=Uncharacterized protein MJ1396; &C64474(... 34 10.0
AJ870419_1(AJ870419|pid:none) Streptococcus pneumoniae lytB gene... 34 10.0
>CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC
35061, complete genome.
Length = 1831
Score = 48.5 bits (114), Expect = 4e-04
Identities = 57/279 (20%), Positives = 118/279 (42%), Gaps = 4/279 (1%)
Frame = +3
Query: 225 YGELDIKGTFKKSSSAKYKNTTIQLYQGSEFIIDNSQFESYLINSIQTSTISFQTGTKAT 404
+G G+ K +++ N L + S ++I S + +N + + + + G
Sbjct: 227 WGHAGYSGSGKCFNNSFINNYMCSLNRNSPWVIGMSLLSNCNVNIVNNTIFNVRDGVSGL 286
Query: 405 MYGLIADAGTFVGVGNSSIIIKDNPVGRSTFFNSSAQLSVRSSSFECHDISNIAGDSEFF 584
+ F+GV N ++ + SSA L++ ++SF D S
Sbjct: 287 GVNSTINGNKFIGVSNLALSV------------SSANLTIENNSFS--DTSMAIAILSSN 332
Query: 585 FSKKSNVSFIDDSNDSFNEIGLYVDSSSIFIQDHTNFYCEKFIGNFDSY--IQFENGSVG 758
+ K+N+ I++S+ IG++V + + +T I D Y + E+ +V
Sbjct: 333 ITVKNNI--IENSS-----IGIWVFGKNASLISNT-------ISLVDGYYAVNVESENVL 378
Query: 759 FINNDYYLN--GESILVVKQSTLTLNHTLKASDDSWVYVLQGSVVNIKNNVLISKNGLIS 932
+NN+ ++ GE I V + + +N+T++ + DS +Y+L + V N + + G+
Sbjct: 379 ILNNNIKVSNFGEGIRVAENNVSIINNTIRTAVDSGIYILSSNNVISGNRISSNLYGVYI 438
Query: 933 GYQSKFEITGKESTEKLYFLLEDQGQLYFYDQSTVILES 1049
S + Y+ DQG++ + + I+ S
Sbjct: 439 DAVSDLYYYTRGVLGVSYYAKIDQGKINHNNITNNIINS 477
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,439,748,303
Number of extensions: 27811924
Number of successful extensions: 83892
Number of sequences better than 10.0: 53
Number of HSP's gapped: 83761
Number of HSP's successfully gapped: 55
Length of query: 357
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 227
Effective length of database: 630,428,194
Effective search space: 143107200038
Effective search space used: 143107200038
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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