Dictyostelium discoideum cDNA Contig-U13566-1

Assembled

Chromosomal Location of Contig-U13566-1

Sequence Contig-U13566-1

AATTCAAATA ACCAACTTGT TTTAGTTCCA ATGTTAAAAT TGTATCCAAT
CGTACCATTG TCGGTGATGG TAGTTTAAAA GGAATAGTTT TACAAATTGA
TAATTATGGT TTCCAATTTC AAAGATTAAG TATCCAACAA GGTGGAAGAG
TATTTTTAGG AATTAAAGGT GACCCAACAA CACTTGGTTC TTCATATGAT
TCTGATGTTG AGATTATTTT TATTTATGGT GAATTGGATA TTAAAGGAAC
TTTCAAAAAA TCATCAAGTG CAAAATATAA AAATACTACA ATTCAACTAT
ATCAAGGTTC AGAATTCATT ATTGATAATA GCCAATTTGA AAGTTATTTA
ATTAATTCAA TTCAAACTTC AACAATATCA TTCCAAACTG GAACAAAAGC
AACAATGTAT GGTCTTATTG CTGATGCTGG AACTTTTGTT GGTGTTGGTA
ATAGTAGTAT CATCATTAAA GATAATCCAG TTGGTAGAAG TACATTCTTT
AATAGTTCAG CTCAACTTTC TGTTAGAAGT TCATCATTTG AATGTCATGA
TATTTCAAAT ATAGCTGGAG ATTCTGAATT TTTCTTTTCT AAAAAATCAA
ATGTATCATT TATAGATGAT TCAAATGATT CATTTAATGA AATTGGATTA
TATGTTGATA GTTCATCAAT TTTTATTCAA GATCATACAA ATTTTTATTG
TGAAAAATTT ATTGGTAATT TTGATAGTTA TATTCAATTT GAGAATGGTT
CAGTTGGTTT TATTAACAAT GATTACTATT TAAATGGTGA ATCAATTTTA
GTAGTAAAAC AATCAACACT TACTCTAAAC CATACATTAA AAGCAAGTGA
TGATTCTTGG GTTTATGTTT TACAAGGATC AGTTGTTAAT ATTAAGAATA
ATGTTTTAAT TAGCAAAAAT GGTTTGATTA GTGGATATCA ATCTAAATTT
GAAATCACTG GAAAGGAATC AACTGAAAAA TTATATTTCC TATTAGAAGA
TCAAGGTCAA TTATATTTCT ATGATCAATC AACTGTAATT TTAGAATCAA
ATTTACAAGC AGCAGGAAAT T

Translated Amino Acid Sequence Contig-U13566-1

fk*PTCFSSNVKIVSNRTIVGDGSLKGIVLQIDNYGFQFQRLSIQQGGRVFLGIKGDPTT
LGSSYDSDVEIIFIYGELDIKGTFKKSSSAKYKNTTIQLYQGSEFIIDNSQFESYLINSI
QTSTISFQTGTKATMYGLIADAGTFVGVGNSSIIIKDNPVGRSTFFNSSAQLSVRSSSFE
CHDISNIAGDSEFFFSKKSNVSFIDDSNDSFNEIGLYVDSSSIFIQDHTNFYCEKFIGNF
DSYIQFENGSVGFINNDYYLNGESILVVKQSTLTLNHTLKASDDSWVYVLQGSVVNIKNN
VLISKNGLISGYQSKFEITGKESTEKLYFLLEDQGQLYFYDQSTVILESNLQAAGN

Homology Contig-U13566-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13566-1 (Contig-U13566-1Q) /CSM_Contig/Conti...  2123  0.0
Contig-U12275-1 (Contig-U12275-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14704-1 (Contig-U14704-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U09772-1 (Contig-U09772-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U05293-1 (Contig-U05293-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12960-1 (Contig-U12960-1Q) /CSM_Contig/Conti...    36  0.076
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    36  0.076
Contig-U04114-1 (Contig-U04114-1Q) /CSM_Contig/Conti...    36  0.076
Contig-U14890-1 (Contig-U14890-1Q) /CSM_Contig/Conti...    34  0.30

Homology Contig-U13566-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ423563) Dictyostelium discoideum cDNA clone:ddv49k16, 5' ...  1294   0.0    2
(BJ422067) Dictyostelium discoideum cDNA clone:ddv44p18, 5' ...  1287   0.0    1
(BJ422740) Dictyostelium discoideum cDNA clone:ddv46l23, 5' ...  1134   0.0    1
(BJ419832) Dictyostelium discoideum cDNA clone:ddv37j07, 5' ...  1076   0.0    1
(BJ419384) Dictyostelium discoideum cDNA clone:ddv35o19, 5' ...  1033   0.0    1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   1e-05  22
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    36   1e-05  17
(AE017263) Mesoplasma florum L1 complete genome.                   38   2e-04  18
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    40   0.011  13
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.024  23

Homology Contig-U13566-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC...    49   4e-04
CP000554_2075(CP000554|pid:none) Prochlorococcus marinus str. MI...    43   0.022
AC116989_1(AC116989|pid:none) Dictyostelium discoideum chromosom...    41   0.082
CP000102_568(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    40   0.14
CP000447_298(CP000447|pid:none) Shewanella frigidimarina NCIMB 4...    39   0.24
CP000521_519(CP000521|pid:none) Acinetobacter baumannii ATCC 179...    39   0.31
AL844506_276(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.53
CP000980_9(CP000980|pid:none) Borrelia duttonii Ly plasmid pl23,...    38   0.69
CP000077_2071(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    38   0.69
AM460223_1(AM460223|pid:none) Vitis vinifera contig VV78X277016....    37   0.90