Homology Contig-U13381-1 vs DNA
Query= Contig-U13381-1 (Contig-U13381-1Q) /CSM_Contig/Contig-U13381-1Q.Seq.d
(1300 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AY044086) Dictyostelium discoideum Rho GDP-dissociation inh... 767 0.0 4
(BJ376253) Dictyostelium discoideum cDNA clone:ddc21c22, 3' ... 726 0.0 3
(BJ373368) Dictyostelium discoideum cDNA clone:ddc2d06, 3' e... 720 0.0 4
(BJ402618) Dictyostelium discoideum cDNA clone:dds17c15, 3' ... 714 0.0 3
(BJ402249) Dictyostelium discoideum cDNA clone:dds20p21, 3' ... 724 0.0 2
(AU060854) Dictyostelium discoideum slug cDNA, clone SLB754. 726 0.0 3
(BJ400806) Dictyostelium discoideum cDNA clone:dds14m19, 3' ... 720 0.0 5
(BJ373326) Dictyostelium discoideum cDNA clone:ddc2g21, 3' e... 718 0.0 5
(AU061950) Dictyostelium discoideum slug cDNA, clone SLG755. 801 0.0 2
(BJ390037) Dictyostelium discoideum cDNA clone:dds20p21, 5' ... 940 0.0 2
(C83873) Dictyostelium discoideum slug cDNA, clone SSA453. 726 0.0 3
(BJ345624) Dictyostelium discoideum cDNA clone:dda28d09, 3' ... 726 0.0 4
(BJ401185) Dictyostelium discoideum cDNA clone:dds22m10, 3' ... 726 0.0 3
(BJ398239) Dictyostelium discoideum cDNA clone:dds11i15, 3' ... 710 0.0 5
(BJ342534) Dictyostelium discoideum cDNA clone:dda14a14, 3' ... 720 0.0 3
(BJ359703) Dictyostelium discoideum cDNA clone:ddc2d06, 5' e... 940 0.0 2
(BJ400966) Dictyostelium discoideum cDNA clone:dds15k13, 3' ... 720 0.0 3
(AU060612) Dictyostelium discoideum slug cDNA, clone SLK636. 940 0.0 1
(BJ374168) Dictyostelium discoideum cDNA clone:ddc6g24, 3' e... 720 0.0 3
(AU062128) Dictyostelium discoideum slug cDNA, clone SLH706. 924 0.0 1
(BJ400001) Dictyostelium discoideum cDNA clone:dds8l07, 3' e... 706 0.0 3
(BJ372689) Dictyostelium discoideum cDNA clone:ddc13n17, 3' ... 678 0.0 2
(AU053512) Dictyostelium discoideum slug cDNA, clone SLI814. 726 0.0 2
(AU039826) Dictyostelium discoideum slug cDNA, clone SLG517. 726 0.0 2
(AU039396) Dictyostelium discoideum slug cDNA, clone SLH706. 446 0.0 3
(AU054093) Dictyostelium discoideum slug cDNA, clone SLK586. 533 0.0 3
(C92262) Dictyostelium discoideum slug cDNA, clone SSD309. 694 0.0 2
(BJ341093) Dictyostelium discoideum cDNA clone:dda5n02, 3' e... 726 0.0 3
(BJ346475) Dictyostelium discoideum cDNA clone:dda24e05, 3' ... 684 0.0 2
(BJ431849) Dictyostelium discoideum cDNA clone:ddv15e22, 3' ... 696 0.0 4
(BJ378246) Dictyostelium discoideum cDNA clone:ddc31d11, 3' ... 569 0.0 2
(BJ401333) Dictyostelium discoideum cDNA clone:dds22m21, 3' ... 379 0.0 4
(BJ372497) Dictyostelium discoideum cDNA clone:ddc12j24, 3' ... 287 0.0 4
(BJ397899) Dictyostelium discoideum cDNA clone:dds10h05, 3' ... 303 e-180 5
(AU038758) Dictyostelium discoideum slug cDNA, clone SSL444. 345 e-141 2
(AU053660) Dictyostelium discoideum slug cDNA, clone SLJ345. 315 e-132 2
(BJ401765) Dictyostelium discoideum cDNA clone:dds19g11, 3' ... 383 e-132 3
(C90938) Dictyostelium discoideum slug cDNA, clone SSJ331. 214 e-119 7
(AU061376) Dictyostelium discoideum slug cDNA, clone SLD861. 416 e-112 1
(BJ372899) Dictyostelium discoideum cDNA clone:ddc14j21, 3' ... 270 e-108 3
(BJ347453) Dictyostelium discoideum cDNA clone:dda27l01, 3' ... 276 e-107 4
(AU054164) Dictyostelium discoideum slug cDNA, clone SLK847. 190 9e-91 3
(BJ372271) Dictyostelium discoideum cDNA clone:ddc11m24, 3' ... 202 4e-78 2
(BJ374235) Dictyostelium discoideum cDNA clone:ddc6h04, 3' e... 228 1e-75 5
(AU052737) Dictyostelium discoideum slug cDNA, clone SLD861. 190 5e-55 3
(BJ417852) Dictyostelium discoideum cDNA clone:ddv15e22, 5' ... 220 1e-52 1
(C83976) Dictyostelium discoideum slug cDNA, clone SLK636. 84 5e-41 5
(GR575871) CBXW1231.b1 CBXW Dictyostelium purpureum 6 hr veg... 86 2e-35 4
(BJ398283) Dictyostelium discoideum cDNA clone:dds11e23, 3' ... 84 4e-31 4
(GR580808) CBZY839.b1 CBZY Dictyostelium purpureum 18 hr sta... 101 4e-29 3
(GR577380) CBXW474.b1 CBXW Dictyostelium purpureum 6 hr vege... 101 6e-26 2
(GR579476) CBZY2099.b1 CBZY Dictyostelium purpureum 18 hr st... 101 7e-26 2
(GR572237) CBTG594.b1 CBTG Dictyostelium purpureum 12 hr veg... 101 8e-26 2
(AU072644) Dictyostelium discoideum slug cDNA, clone SSA453. 129 3e-25 1
(GR581590) CBZZ1476.g1 CBZZ Dictyostelium purpureum 18 hr st... 58 1e-23 4
(GR581589) CBZZ1476.b1 CBZZ Dictyostelium purpureum 18 hr st... 58 1e-23 4
(GR571383) CBTG1901.g1 CBTG Dictyostelium purpureum 12 hr ve... 58 3e-21 4
(GR571382) CBTG1901.b1 CBTG Dictyostelium purpureum 12 hr ve... 101 7e-17 1
(GR570213) CBTG1025.b1 CBTG Dictyostelium purpureum 12 hr ve... 101 7e-17 1
(BJ399585) Dictyostelium discoideum cDNA clone:dds6i18, 3' e... 90 3e-13 1
(BJ342261) Dictyostelium discoideum cDNA clone:dda13m01, 3' ... 88 1e-12 1
(GR577381) CBXW474.g1 CBXW Dictyostelium purpureum 6 hr vege... 56 3e-05 2
(GR577603) CBXW648.g1 CBXW Dictyostelium purpureum 6 hr vege... 56 0.004 1
(AC211038) Solanum lycopersicum chromosome 6 clone C06HBa007... 38 0.33 4
(FJ789640) Brassica rapa subsp. pekinensis, pooled multiple ... 48 0.90 1
(AC189624) Brassica rapa subsp. pekinensis clone KBrH143H14,... 48 0.90 1
(EJ862438) 1093018212301 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.90 1
(EJ635143) 1092982200175 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.90 1
(EJ452918) 1093015449176 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.90 1
(CZ576727) OA_BBa0176K12.r OA_BBa Oryza alta genomic clone O... 48 0.90 1
(CU656018) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.90 4
(CK397321) AGENCOURT_17391067 NIH_ZGC_4 Danio rerio cDNA clo... 38 2.6 2
(AC192717) Gallus gallus BAC clone CH261-36N8 from chromosom... 36 2.7 6
(AC139944) Rattus norvegicus clone CH230-191H6, *** SEQUENCI... 44 3.4 3
(AC183571) Canis familiaris chromosome 16, clone XX-238H14, ... 46 3.6 1
(AL591645) Human DNA sequence from clone RP13-971O21 on chro... 46 3.6 1
(AC148743) Macropus eugenii clone ME_KBa-526C2, WORKING DRAF... 46 3.6 1
(AC148742) Macropus eugenii clone ME_KBa-312J20, WORKING DRA... 46 3.6 1
(AC133827) Rattus norvegicus clone CH230-287O20, WORKING DRA... 46 3.6 1
(AC112042) Rattus norvegicus clone CH230-55N21, *** SEQUENCI... 46 3.6 1
(AC055797) Homo sapiens chromosome 4 clone RP11-715D11 map 4... 46 3.6 1
(AC233980) Homo sapiens chromosome 7 clone RP11-82C14, *** S... 46 3.6 1
(DX929636) MUGQ_CH252P081O12Sp6_CP48_034 CHORI-252 Vervet Mo... 46 3.6 1
(DX929396) MUGQ_CH252P081I10Sp6_CP48_039 CHORI-252 Vervet Mo... 46 3.6 1
(DU004517) 289792 Tomato MboI BAC Library Solanum lycopersic... 46 3.6 1
(CE778130) tigr-gss-dog-17000317009378 Dog Library Canis lup... 46 3.6 1
(CE488146) tigr-gss-dog-17000365563401 Dog Library Canis lup... 46 3.6 1
(CE078298) tigr-gss-dog-17000324461236 Dog Library Canis lup... 46 3.6 1
(DY703932) EST_ssal_rgb2_59671 ssalrgb2 mixed_tissue Salmo s... 46 3.6 1
(FF301461) 279345727 Pea aphid whole body normalized full le... 46 3.6 1
(EX616450) 255395123 Pea aphid whole body normalized full le... 46 3.6 1
(CP000742) Methanococcus vannielii SB, complete genome. 46 3.6 1
(FI296434) AdH1146-CPY2-L18TF AdH1 Arachis duranensis genomi... 42 3.6 2
(AC186546) Gallus gallus BAC clone CH261-9B3 from chromosome... 40 3.7 3
(ER372552) 1093025164304 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.0 2
(AC138697) Homo sapiens chromosome 11, clone RP11-242O20, co... 38 5.8 6
(CP000997) Borrelia recurrentis A1 plasmid pl35, complete se... 32 5.8 6
(AP010898) Solanum lycopersicum DNA, chromosome 8, clone: C0... 38 5.8 4
(AC098102) Rattus norvegicus clone CH230-84E23, *** SEQUENCI... 38 5.9 9
(AC197641) Muntiacus muntjak vaginalis clone CH244-548D17, W... 42 6.4 4
(AC193637) Gallus gallus chromosome 5 clone CH261-49F21, ***... 32 6.6 2
(AC134392) Mus musculus chromosome 16, clone RP24-346N12, co... 32 6.6 2
(AC101578) Mus musculus clone RP23-197E24, LOW-PASS SEQUENCE... 32 7.0 2
(FP236237) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 7.9 5
>(AY044086) Dictyostelium discoideum Rho GDP-dissociation
inhibitor-like protein (rdiB) gene, complete cds; and
unknown gene.
Length = 2872
Score = 767 bits (387), Expect(4) = 0.0
Identities = 387/387 (100%)
Strand = Plus / Minus
Query: 301 aggtaaaagattaaatgaaacagagatttcaaatgatgcaaagaaattaaagacagatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2712 aggtaaaagattaaatgaaacagagatttcaaatgatgcaaagaaattaaagacagatat 2653
Query: 361 agcagatacatcatcacatcttgcacaaaatactaaagaagcaactgtccatgcattgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2652 agcagatacatcatcacatcttgcacaaaatactaaagaagcaactgtccatgcattgaa 2593
Query: 421 tgcaacagcagcagccataactggtggaatgaacatggttagtgaaacattacaacctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2592 tgcaacagcagcagccataactggtggaatgaacatggttagtgaaacattacaacctgt 2533
Query: 481 aattgaaaagactaaagagatgggtacaaatgcagctcatgcagttggtgaaggtattga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 aattgaaaagactaaagagatgggtacaaatgcagctcatgcagttggtgaaggtattga 2473
Query: 541 aacacttaaagctaaaaccggtgaaatgatgggtacagccaaagaggttggtgacaaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 aacacttaaagctaaaaccggtgaaatgatgggtacagccaaagaggttggtgacaaatg 2413
Query: 601 tgctcattggacaactgaacaaactcaagcattttgtgataaatgtaccgaattagccaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 tgctcattggacaactgaacaaactcaagcattttgtgataaatgtaccgaattagccaa 2353
Query: 661 gaatgctaaactcatggccaacgatgc 687
|||||||||||||||||||||||||||
Sbjct: 2352 gaatgctaaactcatggccaacgatgc 2326
Score = 726 bits (366), Expect(4) = 0.0
Identities = 366/366 (100%)
Strand = Plus / Minus
Query: 765 cagccgaactcaacgatgaagctaaaaagaaagctgaacacttggccgaggacacaaaga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 cagccgaactcaacgatgaagctaaaaagaaagctgaacacttggccgaggacacaaaga 2189
Query: 825 aagccactgctgaaaccaaagaaaagttggatgaaactgccaagaaatgtgaacattgga 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2188 aagccactgctgaaaccaaagaaaagttggatgaaactgccaagaaatgtgaacattgga 2129
Query: 885 cagctgaacaaaaagaaaacatatgtaacaaatgttctgaattagctaaagatgcaaata 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2128 cagctgaacaaaaagaaaacatatgtaacaaatgttctgaattagctaaagatgcaaata 2069
Query: 945 aaaccaaagatcaattagcagcaaatgcagagaaaacagctgaaaataccaaagaaaagt 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2068 aaaccaaagatcaattagcagcaaatgcagagaaaacagctgaaaataccaaagaaaagt 2009
Query: 1005 tggacgaaaccgcaaagaaatgtgaacattggaccgctgaacaaaaagaaaacatatgta 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008 tggacgaaaccgcaaagaaatgtgaacattggaccgctgaacaaaaagaaaacatatgta 1949
Query: 1065 gcaaatgttctgaattaaccaaagataccaaagaagccgctgaccatgcctctgaagccg 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 gcaaatgttctgaattaaccaaagataccaaagaagccgctgaccatgcctctgaagccg 1889
Query: 1125 ttaaag 1130
||||||
Sbjct: 1888 ttaaag 1883
Score = 190 bits (96), Expect(4) = 0.0
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1132 atgctgctgacaatctaaatgataaagttcaaaagaaaggtagaggtagaccaaagaaac 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 atgctgctgacaatctaaatgataaagttcaaaagaaaggtagaggtagaccaaagaaac 1823
Query: 1192 attaaactatttacaaataatttaatccttcatttt 1227
||||||||||||||||||||||||||||||||||||
Sbjct: 1822 attaaactatttacaaataatttaatccttcatttt 1787
Score = 48.1 bits (24), Expect(4) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1277 tagaatctttaatttgtaaataaa 1300
||||||||||||||||||||||||
Sbjct: 1739 tagaatctttaatttgtaaataaa 1716
Score = 141 bits (71), Expect = 8e-29
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 839 accaaagaaaagttggatgaaactgccaagaaatgtgaacattggacagctgaacaaaaa 898
||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 2021 accaaagaaaagttggacgaaaccgcaaagaaatgtgaacattggaccgctgaacaaaaa 1962
Query: 899 gaaaacatatgtaacaaatgttctgaattagctaaagat 937
||||||||||||| |||||||||||||||| | ||||||
Sbjct: 1961 gaaaacatatgtagcaaatgttctgaattaaccaaagat 1923
Score = 141 bits (71), Expect = 8e-29
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 992 accaaagaaaagttggacgaaaccgcaaagaaatgtgaacattggaccgctgaacaaaaa 1051
||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 2174 accaaagaaaagttggatgaaactgccaagaaatgtgaacattggacagctgaacaaaaa 2115
Query: 1052 gaaaacatatgtagcaaatgttctgaattaaccaaagat 1090
||||||||||||| |||||||||||||||| | ||||||
Sbjct: 2114 gaaaacatatgtaacaaatgttctgaattagctaaagat 2076
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,422,297,689
Number of extensions: 87605261
Number of successful extensions: 7759177
Number of sequences better than 10.0: 106
Length of query: 1300
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1276
Effective length of database: 104,103,628,548
Effective search space: 132836230027248
Effective search space used: 132836230027248
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home