Homology Contig-U13257-1 vs DNA
Query= Contig-U13257-1 (Contig-U13257-1Q) /CSM_Contig/Contig-U13257-1Q.Seq.d
(593 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ394221) Dictyostelium discoideum cDNA clone:dds34e12, 5' ... 1154 0.0 1
(AY232266) Dictyostelium discoideum putative protein Roco4 (... 981 0.0 2
(GR567342) CBTF3032.g1 CBTF Dictyostelium purpureum 12 hr ve... 258 6e-72 2
(AY232265) Dictyostelium discoideum putative protein Roco2 (... 64 3e-23 6
(AY232273) Dictyostelium discoideum putative protein Roco11 ... 62 2e-09 3
(EK232462) 1095460184468 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.026 1
(EK147369) 1095456028255 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.026 1
(EJ121917) 1092343376738 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.10 1
(DT250713) JGI_CAAU4411.rev CAAU Pimephales promelas brain 7... 50 0.10 1
(EY268254) BF01043A1F01.f1 Normalized subtracted keck librar... 46 0.22 2
(EY270450) BF01053B1A07.f1 Normalized subtracted keck librar... 46 0.23 2
(EK334602) 1095467035856 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.23 2
(EA237979) Sequence 102294 from patent US 7214786. 42 0.31 2
(BE401607) CNW03PL506 ITEC CNW Wheat Powdery Mildew Resistan... 42 0.31 2
(EK994658) 1095521182656 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.40 1
(EK951464) 1095516098853 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.40 1
(EK688512) 1092402572321 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.40 1
(CC810021) ZMMBBc0497L19f ZMMBBc Zea mays subsp. mays genomi... 48 0.40 1
(CT573329) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.85 2
(BX088595) Zebrafish DNA sequence from clone DKEY-218B7 in l... 34 0.86 2
(AL132671) Human DNA sequence from clone RP1-92C8 on chromos... 44 0.92 4
(CP001205) Borrelia burgdorferi ZS7, complete genome. 36 1.1 13
(AE000783) Borrelia burgdorferi B31, complete genome. 36 1.1 13
(AC133648) Mus musculus BAC clone RP23-291B1 from chromosome... 46 1.6 1
(AC174391) Aotus nancymaae clone CH258-266P13, WORKING DRAFT... 46 1.6 1
(AC167320) Sorex araneus clone SA_Ba-82D4, WORKING DRAFT SEQ... 46 1.6 1
(AC167094) Sorex araneus clone SA_Ba-216M1, WORKING DRAFT SE... 46 1.6 1
(DB878639) Populus nigra mRNA, clone: PnFL2-023_G21, 5'end. 38 2.1 2
(DB884994) Populus nigra mRNA, clone: PnFL2-057_O07, 5'end. 38 2.4 2
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 2.6 4
(EJ860773) 1093017974678 Global-Ocean-Sampling_GS-30-02-01-1... 42 3.1 2
(EJ934239) 1093018820752 Global-Ocean-Sampling_GS-30-02-01-1... 42 3.5 2
(FN376210) Schistosoma mansoni genome sequence supercontig S... 32 3.6 2
(AC188150) Canis Familiaris chromosome 6, clone XX-346D24, c... 38 6.2 4
(CU468916) Zebrafish DNA sequence from clone CH211-22C18 in ... 44 6.3 1
(CU457774) Zebrafish DNA sequence from clone CH73-52L15 in l... 44 6.3 1
(CR759963) Zebrafish DNA sequence from clone DKEY-208B15 in ... 44 6.3 1
(CR381637) Zebrafish DNA sequence from clone DKEY-225P19 in ... 44 6.3 1
(BX296554) Zebrafish DNA sequence from clone DKEYP-30G1 in l... 44 6.3 1
(AC157915) Mus musculus chromosome 19, clone RP24-294L7, com... 44 6.3 1
(AC102553) Mus musculus chromosome 19, clone RP23-159D6, com... 44 6.3 1
(AM450042) Vitis vinifera contig VV78X275730.3, whole genome... 44 6.3 1
(AC148107) Oryza sativa Japonica Group chromosome 11 clone O... 44 6.3 1
(AC145808) Oryza sativa Japonica Group chromosome 11 clone O... 44 6.3 1
(AC134931) Oryza sativa Japonica Group chromosome 5 clone OS... 44 6.3 1
(AC129720) Oryza sativa Japonica Group chromosome 5 clone P0... 44 6.3 1
(HA618941) Sequence 1608 from Patent WO2005087953. 44 6.3 1
(AC150615) Callithrix jacchus clone CH259-461N2, WORKING DRA... 44 6.3 1
(AC126210) Rattus norvegicus clone CH230-471B13, WORKING DRA... 44 6.3 1
(AC096130) Rattus norvegicus clone CH230-11C23, *** SEQUENCI... 44 6.3 1
(AC189826) Aotus nancymaae clone CH258-333P13, WORKING DRAFT... 44 6.3 1
(AC189159) Aotus nancymaae clone CH258-158O3, WORKING DRAFT ... 44 6.3 1
(AC187961) Callicebus moloch clone LB5-93I12, WORKING DRAFT ... 44 6.3 1
(EK258229) 1095462036738 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.3 1
(EK040948) 1092959517354 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.3 1
(EK037174) 1092959472417 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.3 1
(EJ598414) 1092961114329 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.3 1
(EI452294) PV_GBa0052F10.r PV_GBa Phaseolus vulgaris genomic... 44 6.3 1
(EI434247) PV_GBa0027F15.r PV_GBa Phaseolus vulgaris genomic... 44 6.3 1
(DX505695) 527_5_14040668_16654_42324_077 Limanthese alba me... 44 6.3 1
(CE660958) tigr-gss-dog-17000368465850 Dog Library Canis lup... 44 6.3 1
(FK649736) 454GmaGlobSeed384368 Soybean Seeds Containing Glo... 44 6.3 1
(ES609859) M15g11 American mink brain Neovison vison cDNA cl... 44 6.3 1
(CP000507) Shewanella amazonensis SB2B, complete genome. 44 6.3 1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 44 6.3 1
(AC231696) Choloepus hoffmanni clone CH281-201A18, WORKING D... 38 6.3 3
(AL691418) Mouse DNA sequence from clone RP23-193L14 on chro... 42 7.7 5
>(BJ394221) Dictyostelium discoideum cDNA clone:dds34e12, 5' end,
single read.
Length = 584
Score = 1154 bits (582), Expect = 0.0
Identities = 582/582 (100%)
Strand = Plus / Plus
Query: 1 cataaaaaacaaattgaattaactcatgcttgtacagttggtgatgtaaattatttagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cataaaaaacaaattgaattaactcatgcttgtacagttggtgatgtaaattatttagat 60
Query: 61 caaattattttatctggtgtttcaacagatcaattaaaagaagcacataaagcaggacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaattattttatctggtgtttcaacagatcaattaaaagaagcacataaagcaggacat 120
Query: 121 gcaattgtatttgattcattattaacacataatagtaattcattagttgttacaggtaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaattgtatttgattcattattaacacataatagtaattcattagttgttacaggtaca 180
Query: 181 atggcattattaggagcgattgtagagaatggagatagaaaaggtaaacgtttatcatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atggcattattaggagcgattgtagagaatggagatagaaaaggtaaacgtttatcatta 240
Query: 241 tcaagatcgaatttatctagattcccaatgtcgataacacaaatgtgtactcatttggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaagatcgaatttatctagattcccaatgtcgataacacaaatgtgtactcatttggtt 300
Query: 301 gagttagatttaagtgataataaaatcaccgaattaccaaaggatatccaattgttaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagttagatttaagtgataataaaatcaccgaattaccaaaggatatccaattgttaaag 360
Query: 361 tctttgagaattttaattttacgtggtaatctattggaagatataccattggagatttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctttgagaattttaattttacgtggtaatctattggaagatataccattggagatttgt 420
Query: 421 tatttaggagatttaaagattttagagttacaagaaaatccattgaataatttcccattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatttaggagatttaaagattttagagttacaagaaaatccattgaataatttcccattg 480
Query: 481 agtgttgttcaaagtggtacaaagaatcttttattattttgtaagaatatattggagcgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtgttgttcaaagtggtacaaagaatcttttattattttgtaagaatatattggagcgt 540
Query: 541 aaaaagagtgaaacttggaataaggtcaagttgatgtttgtt 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaaagagtgaaacttggaataaggtcaagttgatgtttgtt 582
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 814,167,234
Number of extensions: 50375721
Number of successful extensions: 3960986
Number of sequences better than 10.0: 67
Length of query: 593
Length of database: 106,710,029,556
Length adjustment: 23
Effective length of query: 570
Effective length of database: 104,212,228,590
Effective search space: 59400970296300
Effective search space used: 59400970296300
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home