Homology Contig-U13224-1 vs DNA
Query= Contig-U13224-1 (Contig-U13224-1Q) /CSM_Contig/Contig-U13224-1Q.Seq.d
(670 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ406576) Dictyostelium discoideum cDNA clone:dds35a20, 3' ... 779 0.0 1
(BJ404227) Dictyostelium discoideum cDNA clone:dds27f24, 3' ... 339 e-121 2
(BJ445314) Dictyostelium discoideum cDNA clone:ddv59i03, 3' ... 38 0.016 3
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 52 0.029 1
(EL502177) B02_PFLAB1-M-PLATE5B.AB1 Blood stage Plasmodium f... 52 0.029 1
(BJ441056) Dictyostelium discoideum cDNA clone:ddv45e14, 3' ... 38 0.034 3
(BJ406856) Dictyostelium discoideum cDNA clone:dds36m14, 3' ... 38 0.063 3
(AC193278) Aotus nancymaae clone CH258-60J7, WORKING DRAFT S... 34 0.26 2
(CU928833) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.46 1
(FH976697) CHO_OF6821xe15r1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.46 1
(GO106258) CAFZ6932.fwd CAFZ Alvinella pompejana Incyte regu... 48 0.46 1
(EC820483) SME00005148 esmbsro2 Sawyeria marylandensis cDNA,... 42 0.64 2
(EJ560211) 1092959544468 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.88 3
(ER349171) 1092345447858 Global-Ocean-Sampling_GS-34-01-01-1... 34 0.90 3
(EJ430832) 1093015254944 Global-Ocean-Sampling_GS-28-01-01-1... 34 1.0 3
(EJ658176) 1092955013920 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.2 3
(EJ877939) 1093018380371 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.3 3
(EJ783400) 1093017296296 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.4 3
(AC141814) Apis mellifera clone CH224-61C3, WORKING DRAFT SE... 38 1.4 5
(CC275014) CH261-30I21_RM1.1 CH261 Gallus gallus genomic clo... 42 1.4 2
(EJ778230) 1093011286554 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.5 3
(EJ797559) 1093017408951 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.6 3
(ER441558) 1092963815381 Global-Ocean-Sampling_GS-35-01-01-1... 34 1.6 3
(EJ615515) 1092963014935 Global-Ocean-Sampling_GS-29-01-01-1... 34 1.6 3
(EK359685) 1095468897454 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.7 3
(EJ898425) 1093018476988 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.7 3
(EJ765515) 1092963204548 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.7 3
(AC138539) Magnaporthe grisea chromosome 7 clone 01B23, *** ... 46 1.8 1
(AC114475) Magnaporthe grisea chromosome 7 clone 02G21, *** ... 46 1.8 1
(AC180264) Strongylocentrotus purpuratus clone R3-3123F18, W... 46 1.8 1
(AG483412) Mus musculus molossinus DNA, clone:MSMg01-378J16.... 46 1.8 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 2.2 8
(AC130002) Rattus norvegicus clone CH230-306F19, *** SEQUENC... 40 2.2 3
(AG397283) Mus musculus molossinus DNA, clone:MSMg01-217O21.... 40 2.9 2
(AC176239) Strongylocentrotus purpuratus clone R3-3061D02, W... 42 2.9 3
(AC127717) Rattus norvegicus clone CH230-36F15, WORKING DRAF... 40 3.1 2
(EY306873) CAWX20156.rev CAWX Helobdella robusta Primary Ear... 36 3.2 2
(EY353849) CAWZ2731.rev CAWZ Helobdella robusta Primary Late... 36 3.3 2
(EY352723) CAWZ1898.rev CAWZ Helobdella robusta Primary Late... 36 3.3 2
(EY293546) CAWX11187.rev CAWX Helobdella robusta Primary Ear... 36 3.7 2
(AM460282) Vitis vinifera contig VV78X085811.7, whole genome... 32 3.8 2
(EY310381) CAWX22116.rev CAWX Helobdella robusta Primary Ear... 36 3.8 2
(EY322653) CAWX8566.rev CAWX Helobdella robusta Primary Earl... 36 3.8 2
(EY325019) CAWY10661.fwd CAWY Helobdella robusta Subtracted ... 36 3.8 2
(EY324884) CAWY10573.fwd CAWY Helobdella robusta Subtracted ... 36 3.9 2
(DN048894) JGI_CABA5354.fwd NIH_XGC_tropKid1 Xenopus (Silura... 42 3.9 2
(EY332236) CAWY473.fwd CAWY Helobdella robusta Subtracted Ea... 36 4.0 2
(BX649335) Zebrafish DNA sequence from clone DKEY-24C2 in li... 36 4.5 8
(FK859817) 000004981373J05 D. serrata mRNA from different de... 34 4.6 2
(CU834949) A BAC library has been constructed from PN40024 g... 32 4.7 2
(DH181909) Oryzias latipes Fosmid clone:GOLWFno462_l23, forw... 34 4.8 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 5.7 13
(AM478090) Vitis vinifera contig VV78X122122.5, whole genome... 40 5.9 3
(AC107168) Rattus norvegicus clone CH230-80G16, *** SEQUENCI... 40 6.4 3
(CU681837) Zebrafish DNA sequence from clone CH73-187E12 in ... 44 7.1 1
(CR381646) Zebrafish DNA sequence from clone DKEY-241L7 in l... 44 7.1 1
(CR381633) Zebrafish DNA sequence from clone CH211-230M9 in ... 44 7.1 1
(AC174643) Mus musculus BAC clone RP24-235D23 from chromosom... 44 7.1 1
(AC140242) Mus musculus BAC clone RP23-290N4 from chromosome... 44 7.1 1
(AC139182) Mus musculus BAC clone RP24-125O22 from 8, comple... 44 7.1 1
(AM476007) Vitis vinifera contig VV78X162485.17, whole genom... 44 7.1 1
(AC006577) Sequence of BAC F15I1 from Arabidopsis thaliana c... 44 7.1 1
(BD452600) Diagnosis of Diseases Associated with tumor suppr... 44 7.1 1
(AX652362) Sequence 2232 from Patent WO03000898. 44 7.1 1
(AX461400) Sequence 329 from Patent WO0198480. 44 7.1 1
(AX251079) Sequence 47 from Patent WO0168912. 44 7.1 1
(EF173379) Aedes aegypti clone BAC ND83P15, complete sequence. 44 7.1 1
(AM494941) Leishmania braziliensis chromosome 4. 44 7.1 1
(AL606833) Human DNA sequence from clone RP11-647M7 on chrom... 44 7.1 1
(AL356296) Human DNA sequence from clone RP11-340B1 on chrom... 44 7.1 1
(AC158862) Bos taurus clone CH240-78P16, WORKING DRAFT SEQUE... 44 7.1 1
(AC149800) Aedes aegypti clone NDL.83P15, *** SEQUENCING IN ... 44 7.1 1
(AC130112) Rattus norvegicus clone CH230-100B18, WORKING DRA... 44 7.1 1
(AC123189) Rattus norvegicus clone CH230-128H9, *** SEQUENCI... 44 7.1 1
(AC114836) Rattus norvegicus clone CH230-219B19, WORKING DRA... 44 7.1 1
(AC107255) Rattus norvegicus clone CH230-341A18, *** SEQUENC... 44 7.1 1
(AC106407) Rattus norvegicus clone CH230-133G12, *** SEQUENC... 44 7.1 1
(AC097684) Rattus norvegicus clone CH230-64B2, *** SEQUENCIN... 44 7.1 1
(AC096453) Rattus norvegicus clone CH230-41P1, WORKING DRAFT... 44 7.1 1
(CT867974) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1
(CT025580) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1
(AC231078) Bos taurus clone CH240-492C17, WORKING DRAFT SEQU... 44 7.1 1
(AC193761) Gallus gallus chromosome 1 clone TAM33-49H4, *** ... 44 7.1 1
(AC185006) Bos taurus clone CH240-278P18, WORKING DRAFT SEQU... 44 7.1 1
(AC177678) Strongylocentrotus purpuratus clone R3-1017F06, W... 44 7.1 1
(AC009870) Homo sapiens clone RP11-219J10, WORKING DRAFT SEQ... 44 7.1 1
(BH308812) CH230-38D19.TJ CHORI-230 Segment 1 Rattus norvegi... 44 7.1 1
(EJ397811) 1093012012943 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.1 1
(DX542507) GH_MBb0057B22f GH_MBb Gossypium hirsutum genomic ... 44 7.1 1
(DU957295) 227747 Tomato MboI BAC Library Solanum lycopersic... 44 7.1 1
(DU405502) 1098448374931 CHORI-243 Ovis aries genomic clone ... 44 7.1 1
(AL082049) Arabidopsis thaliana genome survey sequence SP6 e... 44 7.1 1
(DH733761) Rattus norvegicus DNA, BAC clone: RNB1-305I15, 5'... 44 7.1 1
(CE825454) tigr-gss-dog-17000318989319 Dog Library Canis lup... 44 7.1 1
(CC857537) NDL.120C19.T7 Notre Dame Liverpool Aedes aegypti ... 44 7.1 1
(CC856358) NDL.104K18.SP6 Notre Dame Liverpool Aedes aegypti... 44 7.1 1
(EG963530) AU_Ich_020D_G11 Whole organism normalized cDNA li... 44 7.1 1
(DY024990) 53COT2_T3_011_A09_03SEP2004_079 Brassica napus 36... 44 7.1 1
(DY024802) 53COT2_T3_009_A02_03SEP2004_016 Brassica napus 36... 44 7.1 1
(DB780417) Apis mellifera head cDNA, RIKEN full-length enric... 44 7.1 1
(DB770430) Apis mellifera head cDNA, RIKEN full-length enric... 44 7.1 1
(EV152636) 0095906 Brassica napus Bud library Brassica napus... 44 7.1 1
(CU929360) Zebrafish DNA sequence from clone CH73-145L22 in ... 40 7.2 3
(AM446506) Vitis vinifera contig VV78X111753.6, whole genome... 34 7.2 3
(AC232164) Oryza minuta clone OM__Ba0050F10, *** SEQUENCING ... 36 9.6 5
(AC174579) Bos taurus clone CH240-295J19, WORKING DRAFT SEQU... 42 9.8 2
>(BJ406576) Dictyostelium discoideum cDNA clone:dds35a20, 3' end,
single read.
Length = 447
Score = 779 bits (393), Expect = 0.0
Identities = 404/405 (99%)
Strand = Plus / Minus
Query: 1 cttgataattttgttattattgttattctaattantgaaattgtgattattagtggtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttgataattttgttattattgttattctaattantgaaattgtgattattagtggtgtt 388
Query: 61 aattaatattacaaagtgaaangatgataaagatatttgtgtgtgtaagatggtggtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aattaatattacaaagtgaaangatgataaagatatttgtgtgtgtaagatggtggtgaa 328
Query: 121 atttcattgtgaagttgatgttaattaattcttttaaacttaaaacatggtgatgctact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atttcattgtgaagttgatgttaattaattcttttaaacttaaaacatggtgatgctact 268
Query: 181 ttgtaccggaatagaggatggttttgaaataataaaacaatacctatattaccaaattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgtaccggaatagaggatggttttgaaataataaaacaatacctatattaccaaattaa 208
Query: 241 gtgaggttagctaatttagtgaggttagaaccaccaaataaaccagttccagggattaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtgaggttagctaatttagtgaggttagaaccaccaaataaaccagttccagggattaaa 148
Query: 301 attgaaantaaaaaacaaccaattgtttgttgagacggttgagccgaaccattaaaatcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 147 attgaaantaaaaaacaaccaattgtttgttgagacggttgagccgaaccattanaatcc 88
Query: 361 atcttcagtagttgtagattcaagttggttaaatgtatgggaata 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 atcttcagtagttgtagattcaagttggttaaatgtatgggaata 43
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 831,698,317
Number of extensions: 53224342
Number of successful extensions: 4481957
Number of sequences better than 10.0: 109
Length of query: 670
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 646
Effective length of database: 104,103,628,548
Effective search space: 67250944042008
Effective search space used: 67250944042008
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home