Homology Contig-U13187-1 vs Protein

Query= Contig-U13187-1 (Contig-U13187-1Q) /CSM_Contig/Contig-U13187-1Q.Seq.d
         (1055 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8H0T4) RecName: Full=E3 ubiquitin-protein ligase UPL2;        ...    61   8e-08
AC003671_14(AC003671|pid:none) Arabidopsis thaliana chromosome 1...    61   8e-08
(Q8GY23) RecName: Full=E3 ubiquitin-protein ligase UPL1;        ...    60   1e-07
AC002304_10(AC002304|pid:none) Genomic sequence for Arabidopsis ...    60   1e-07
AP005590_16(AP005590|pid:none) Oryza sativa Japonica Group genom...    50   2e-04
AL844508_163(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.89
AP006852_343(AP006852|pid:none) Candida albicans genomic DNA, ch...    37   0.89
(O13433) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p...    37   0.89
BA000016_1221(BA000016|pid:none) Clostridium perfringens str. 13...    37   1.5
AE014298_2291(AE014298|pid:none) Drosophila melanogaster chromos...    36   2.6
AE014186_398(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.6
(P57423) RecName: Full=Flagellar basal-body rod protein flgF;  &...    35   3.4
CP001158_310(CP001158|pid:none) Buchnera aphidicola str. Tuc7 (A...    35   3.4
AC116100_11(AC116100|pid:none) Dictyostelium discoideum chromoso...    35   4.4
AE014187_554(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.4
EU746611_5(EU746611|pid:none) Nasonia giraulti strain RV2 NADH d...    35   4.4
CP000096_5(CP000096|pid:none) Pelodictyon luteolum DSM 273, comp...    35   5.8
FJ478176_5(FJ478176|pid:none) Venturia canescens mitochondrion, ...    35   5.8
BA000016_100(BA000016|pid:none) Clostridium perfringens str. 13 ...    34   7.6
AL844504_249(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.9

>(Q8H0T4) RecName: Full=E3 ubiquitin-protein ligase UPL2;
            Short=Ubiquitin-protein ligase 2;          EC=6.3.2.-;
          Length = 3658

 Score = 60.8 bits (146), Expect = 8e-08
 Identities = 36/135 (26%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
 Frame = +3

Query: 63   ICLGLLKPS-PSIIDGSLLKLISELTKNYAIANYFMKNQGMLLLQAKNTKSSMLKENTIY 239
            I  GL+K   P++I  ++L+L + LTK++A+A  F++N G+  L     K      +T+
Sbjct: 1558 IACGLIKQRVPAMIMQAVLQLCARLTKSHALAIQFLENGGLSSLFNLPKKCFFPGYDTVA 1617

Query: 240  VINIFKQLLDDNKTVYNTMQSNIRHTINNKGVSKGIPTKTLLGLLSKDVSKNPITFLKAC 419
             + I + L++D +T+   M++ IR T++ K     +  +T L  ++  +S++P+ F+KA
Sbjct: 1618 SV-IVRHLVEDPQTLQIAMETEIRQTLSGKRHIGRVLPRTFLTTMAPVISRDPVVFMKAV 1676

Query: 420  SEICRIHTNSNSVYL 464
            +  C++ ++  + ++
Sbjct: 1677 ASTCQLESSGGTDFV 1691

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,426,432,948
Number of extensions: 26085279
Number of successful extensions: 72154
Number of sequences better than 10.0: 20
Number of HSP's gapped: 72086
Number of HSP's successfully gapped: 20
Length of query: 351
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 222
Effective length of database: 633,664,753
Effective search space: 140673575166
Effective search space used: 140673575166
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)