<Clone: Contig-U13187-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U13187-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U13187-1

< more Chromosomal info >

Chromosome Number 4
Length 5430582
Start Poin 2,718,172
End Point 2,717,117
Strand MINUS

Sequence Contig-U13187-1

TACAAAAACA ACAAGAGGAA GAACAAGATA GATGTTCACC AACAGACACT
ACATTGATTG ATATTTGTTT AGGATTATTG AAACCTTCAC CAAGTATAAT
CGATGGATCA TTATTGAAAT TAATCTCTGA ACTCACTAAA AACTATGCTA
TTGCAAACTA TTTTATGAAG AATCAAGGTA TGCTTCTCTT ACAAGCCAAA
AATACCAAGT CTTCAATGTT AAAAGAGAAT ACAATCTATG TGATCAATAT
TTTCAAACAG CTTTTGGATG ATAATAAAAC CGTTTACAAC ACTATGCAAT
CAAATATTCG TCATACAATT AATAATAAGG GTGTTTCAAA AGGTATTCCA
ACTAAAACTT TATTGGGTTT ACTCTCTAAG GATGTTTCAA AGAATCCAAT
CACTTTTTTA AAGGCTTGTT CAGAAATTTG TCGTATTCAT ACCAATTCAA
ACTCTGTCTA TTTGTCTGCA CAAGCAAATG AAATCTTTGA AAAGAATGTT
AGTTCTTGTG AATTAAAAGA TTTTCCACAT TTCCAACAAC TCTCAAACTT
TTTAATTAAA TCATTATTAA TTAAAGATGA AACACCAATT TCAACAACTT
CATCTATATC TACTACTACC AACACCAACA CCAACACCAA CACCAACACC
AACACCAACA CCAACACCAA CACCAACACC AACACCAACA CCAACACCAA
CACCAACACC ACCAATAATA CACCAACACC AGCACAATTA TCAAAAGAAT
TAAGAAAATC TTCATCTTTG AAAAGTATAA CAAGTGTAGC AGCAGCATTG
GCAGCCGATC AACAACTTCA AGATAAAACA TCAAATATCT TGAGCAAAGC
AAATATATTG AGGTTGTTAG AGGAATTATT AATTCAATAC CCATTGCTCC
AACAAACCAT TTTAAATTAT CAAGGTGTTA ATTTGGTTCA ATACGTTTTT
GAACATTTCT TACCATGTAC CTCATTGACT GCTGAAGAGA AAGCAAGTGG
TGAATTATTT AATGCAACTC ATCAAGCTGC TTCAAGATTC TTGGTTTCTT
TGTGT

Translated Amino Acid Sequence Contig-U13187-1

<All Frames> 
QKQQEEEQDRCSPTDTTLIDICLGLLKPSPSIIDGSLLKLISELTKNYAIANYFMKNQGM
LLLQAKNTKSSMLKENTIYVINIFKQLLDDNKTVYNTMQSNIRHTINNKGVSKGIPTKTL
LGLLSKDVSKNPITFLKACSEICRIHTNSNSVYLSAQANEIFEKNVSSCELKDFPHFQQL
SNFLIKSLLIKDETPISTTSSISTTTNTNTNTNTNTNTNTNTNTNTNTNTNTNTNTTNNT
PTPAQLSKELRKSSSLKSITSVAAALAADQQLQDKTSNILSKANILRLLEELLIQYPLLQ
QTILNYQGVNLVQYVFEHFLPCTSLTAEEKASGELFNATHQAASRFLVSLC


Homology Contig-U13187-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U13187-1 (Contig-U13187-1Q) /CSM_Contig/Conti...  1223  0.0
Contig-U10974-1 (Contig-U10974-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U04283-1 (Contig-U04283-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U03850-1 (Contig-U03850-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14272-1 (Contig-U14272-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12392-1 (Contig-U12392-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12174-1 (Contig-U12174-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U14689-1 (Contig-U14689-1Q) /CSM_Contig/Conti...    34  0.29


Homology Contig-U13187-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ395428) Dictyostelium discoideum cDNA clone:dds38h19, 5' ...  1035   0.0    1
(BJ391256) Dictyostelium discoideum cDNA clone:dds15g20, 5' ...   630   0.0    2
(EJ724759) 1092959489992 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.079  3
(AF156221) Trama rara isolate TraraPol cytochrome oxidase II...    34   0.14   2
(EU196581) Brachycaudus mordvilkoi isolate S248 cytochrome o...    34   0.14   2
(DY894206) CeleSEQ13720 Cunninghamella elegans pBluescript (...    50   0.18   1
(CN368134) 17000600172988 GRN_PREHEP Homo sapiens cDNA 5', m...    50   0.18   1
(BG742677) 602633283F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone...    50   0.18   1
(BJ363732) Dictyostelium discoideum cDNA clone:ddc28n05, 5' ...    46   0.45   2
(BJ329585) Dictyostelium discoideum cDNA clone:dda25g14, 5' ...    46   0.46   2


Homology Contig-U13187-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


(Q8H0T4) RecName: Full=E3 ubiquitin-protein ligase UPL2;        ...    61   8e-08
AC003671_14(AC003671|pid:none) Arabidopsis thaliana chromosome 1...    61   8e-08
(Q8GY23) RecName: Full=E3 ubiquitin-protein ligase UPL1;        ...    60   1e-07
AC002304_10(AC002304|pid:none) Genomic sequence for Arabidopsis ...    60   1e-07
AP005590_16(AP005590|pid:none) Oryza sativa Japonica Group genom...    50   2e-04
AL844508_163(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.89
AP006852_343(AP006852|pid:none) Candida albicans genomic DNA, ch...    37   0.89
(O13433) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p...    37   0.89
BA000016_1221(BA000016|pid:none) Clostridium perfringens str. 13...    37   1.5
AE014298_2291(AE014298|pid:none) Drosophila melanogaster chromos...    36   2.6


<Clone: Contig-U13187-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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