Homology Contig-U13187-1 vs DNA
Query= Contig-U13187-1 (Contig-U13187-1Q) /CSM_Contig/Contig-U13187-1Q.Seq.d
(1055 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ395428) Dictyostelium discoideum cDNA clone:dds38h19, 5' ... 1035 0.0 1
(BJ391256) Dictyostelium discoideum cDNA clone:dds15g20, 5' ... 630 0.0 2
(EJ724759) 1092959489992 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.079 3
(AF156221) Trama rara isolate TraraPol cytochrome oxidase II... 34 0.14 2
(EU196581) Brachycaudus mordvilkoi isolate S248 cytochrome o... 34 0.14 2
(DY894206) CeleSEQ13720 Cunninghamella elegans pBluescript (... 50 0.18 1
(CN368134) 17000600172988 GRN_PREHEP Homo sapiens cDNA 5', m... 50 0.18 1
(BG742677) 602633283F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone... 50 0.18 1
(BJ363732) Dictyostelium discoideum cDNA clone:ddc28n05, 5' ... 46 0.45 2
(BJ329585) Dictyostelium discoideum cDNA clone:dda25g14, 5' ... 46 0.46 2
(BJ387609) Dictyostelium discoideum cDNA clone:dds3o13, 5' e... 46 0.46 2
(BJ327600) Dictyostelium discoideum cDNA clone:dda21g03, 5' ... 46 0.48 2
(BJ327274) Dictyostelium discoideum cDNA clone:dda19h23, 5' ... 46 0.52 2
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.52 16
(DD210789) KINASES AND PHOSPHATASES. 48 0.73 1
(BD440867) A novel protein and DNA encoding it. 48 0.73 1
(AR837715) Sequence 183 from patent US 7033790. 48 0.73 1
(AR837714) Sequence 181 from patent US 7033790. 48 0.73 1
(AK131359) Homo sapiens cDNA FLJ16392 fis, clone TRACH202004... 48 0.73 1
(AB072828) Homo sapiens NEK3 mRNA for NIMA-related protein k... 48 0.73 1
(AC125777) Rattus norvegicus clone CH230-7B13, *** SEQUENCIN... 48 0.73 1
(AC108260) Rattus norvegicus clone CH230-190K14, *** SEQUENC... 48 0.73 1
(CR612915) full-length cDNA clone CS0DC028YO17 of Neuroblast... 48 0.73 1
(CR606903) full-length cDNA clone CS0DL010YK10 of B cells (R... 48 0.73 1
(EJ437158) 1093015286631 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.73 1
(DH528552) Rattus norvegicus DNA, BAC clone: RNB1-028J07, 3'... 48 0.73 1
(BX395060) human full-length cDNA 5-PRIME end of clone CS0DC... 48 0.73 1
(BX364188) human full-length cDNA 5-PRIME end of clone CS0DL... 48 0.73 1
(BM696814) UI-E-DW0-agl-a-18-0-UI.r1 UI-E-DW0 Homo sapiens c... 48 0.73 1
(GR565131) CBTF1329.b1 CBTF Dictyostelium purpureum 12 hr ve... 48 0.73 1
(AC201314) Strongylocentrotus purpuratus clone R3-16K19, WOR... 36 0.90 4
(EK402859) 1095469550158 Global-Ocean-Sampling_GS-31-01-01-1... 44 2.7 2
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g... 38 2.7 22
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ... 46 2.9 1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 46 2.9 1
(AR549273) Sequence 4404 from patent US 6747137. 46 2.9 1
(AC218088) Spermophilus tridecemlineatus clone VMRC20-691L15... 46 2.9 1
(EI339423) GM_WBc0082K04.f GM_WBc Glycine max genomic clone ... 46 2.9 1
(EI332969) GM_WBc0073G12.f GM_WBc Glycine max genomic clone ... 46 2.9 1
(CZ937211) 256735 Tomato EcoRI BAC Library Solanum lycopersi... 46 2.9 1
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet... 46 2.9 1
(BZ821047) PUFFB35TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 42 4.6 2
(CP000395) Borrelia afzelii PKo, complete genome. 36 4.6 15
(AM424211) Vitis vinifera contig VV78X227435.3, whole genome... 34 5.0 5
(AP007468) Lotus japonicus genomic DNA, chromosome 4, clone:... 42 5.2 5
(AC236780) Tupaia belangeri BAC clone CH275-45H12 from chrom... 40 5.6 2
(CI322060) Oryza sativa Japonica Group cDNA, clone: J01B3064... 40 6.2 2
(AM482049) Vitis vinifera contig VV78X122996.6, whole genome... 42 7.2 2
(AF156202) Trama maritima isolate TmaritimaO cytochrome oxid... 34 7.3 2
(AF156201) Trama maritima isolate TmaritimaC cytochrome oxid... 34 7.3 2
(EU196570) Brachycaudus rumexicolens isolate S118 cytochrome... 34 7.3 2
(EU196568) Brachycaudus bicolor isolate S110 cytochrome oxid... 34 7.3 2
(AF156210) Stomaphis fagi cytochrome oxidase II gene, partia... 32 7.3 2
(CQ583823) Sequence 11581 from Patent WO0171042. 40 8.1 2
(BX548174) Prochlorococcus marinus MED4 complete genome. 36 10.0 18
>(BJ395428) Dictyostelium discoideum cDNA clone:dds38h19, 5' end,
single read.
Length = 522
Score = 1035 bits (522), Expect = 0.0
Identities = 522/522 (100%)
Strand = Plus / Plus
Query: 1 tacaaaaacaacaagaggaagaacaagatagatgttcaccaacagacactacattgattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacaaaaacaacaagaggaagaacaagatagatgttcaccaacagacactacattgattg 60
Query: 61 atatttgtttaggattattgaaaccttcaccaagtataatcgatggatcattattgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatttgtttaggattattgaaaccttcaccaagtataatcgatggatcattattgaaat 120
Query: 121 taatctctgaactcactaaaaactatgctattgcaaactattttatgaagaatcaaggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatctctgaactcactaaaaactatgctattgcaaactattttatgaagaatcaaggta 180
Query: 181 tgcttctcttacaagccaaaaataccaagtcttcaatgttaaaagagaatacaatctatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcttctcttacaagccaaaaataccaagtcttcaatgttaaaagagaatacaatctatg 240
Query: 241 tgatcaatattttcaaacagcttttggatgataataaaaccgtttacaacactatgcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatcaatattttcaaacagcttttggatgataataaaaccgtttacaacactatgcaat 300
Query: 301 caaatattcgtcatacaattaataataagggtgtttcaaaaggtattccaactaaaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaatattcgtcatacaattaataataagggtgtttcaaaaggtattccaactaaaactt 360
Query: 361 tattgggtttactctctaaggatgtttcaaagaatccaatcacttttttaaaggcttgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattgggtttactctctaaggatgtttcaaagaatccaatcacttttttaaaggcttgtt 420
Query: 421 cagaaatttgtcgtattcataccaattcaaactctgtctatttgtctgcacaagcaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagaaatttgtcgtattcataccaattcaaactctgtctatttgtctgcacaagcaaatg 480
Query: 481 aaatctttgaaaagaatgttagttcttgtgaattaaaagatt 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatctttgaaaagaatgttagttcttgtgaattaaaagatt 522
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,406,787,001
Number of extensions: 86156670
Number of successful extensions: 7126492
Number of sequences better than 10.0: 56
Length of query: 1055
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1031
Effective length of database: 104,103,628,548
Effective search space: 107330841032988
Effective search space used: 107330841032988
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home