Dictyostelium discoideum cDNA Contig-U13162-1

Assembled

Chromosomal Location of Contig-U13162-1

Sequence Contig-U13162-1

TATGCATGGG CAAGAAGATT AGATAACAAT TATCCAGAGC ATAAACATTT
TCAAGTTTCA ATGTGGCAAG GATTGAAATT GGTTGGTATG GGATATAGAA
TGTGGAAATA TGTAAAGAAA GAAACTTCCT CTGGAAGAGT ACCAATTATG
GATCCATTCA ATCTACCAAA ACCTGGTCCA ATCATGGGTG TACCCATTGG
TGGTATTGGT AGTGGTAGTA TTAATCGTGG TTGGAAAGGT GATTTCGTTA
GATGGAATCT TAATAATGGT TTAGTTTCGA ATGAAATCGT TGATGTTGAT
AAATTTTCAG TTTATATTAA TTTTGATAAT TCAAATACTT CATCATCATC
ATCATCATCA TCATCAAATT CATCAACACC ACCACCACAA TTTTCAAATA
ATAATAATAA CAGCTATAAC AACAGCTATA ACAATAACAT TAATAATAAT
GGATTTGATA ATAATTTAAA AAGTAAACAA AAAGCAGTTG TATTATATCC
AGGTAAACCA AAATCAAATT TAAATTTAGA TGTTTGGAAT TGGGGATTAA
AAGGTGATAA TAGTTGTTAT TTTGGTTTAT TTTCCAAGAG CATGGACAGT
TTATGAAGAA CCTCATCCTG ATATTAGATT AACTTGTAAA CAAGTTTCAC
CAGTCATACC TCACAATTAT CAAGAATCTT CATATCCATG TGGTGTTTAT
GTTTGGAAAA TTGAAAATAA TAATCAATAT TCATCCGCTG ATGTTAGTTT
AATGTTAACT TGGCAAAATA GTATTGGTAC TCAATCTGAT CAAGATGGTG
GTCATTTTAA TAAATATTTT ACTTTTGGTG ATAATGATCA ACAATCACCA
TCATCATCAT CATCATCATC ATCTGGTAAT AATAAAAAAA ATATAAAAGG
TATTACTATG ATTCATAAAA AAGAACAAAA ATGTACATTA CCAAATGGTA
ATACAAAGGT ATTTAATGAT CCAATGGAAT ATTCAATTGC AGTAATGGAT
GAACCAGATG TTGAAATTAG TTTTTGTGAA AGATTTGAAA CTACTAGTAG
ATTGGATGCT GCAAATTTAT GGTATACATT CAATAAGAAA GGTGAATTGG
AGAATAATAA AGATTCTAGA CCATCAGCAC CAAAGAAAC

Translated Amino Acid Sequence Contig-U13162-1

YAWARRLDNNYPEHKHFQVSMWQGLKLVGMGYRMWKYVKKETSSGRVPIMDPFNLPKPGP
IMGVPIGGIGSGSINRGWKGDFVRWNLNNGLVSNEIVDVDKFSVYINFDNSNTSSSSSSS
SSNSSTPPPQFSNNNNNSYNNSYNNNINNNGFDNNLKSKQKAVVLYPGKPKSNLNLDVWN
WGLKGDNSCYFGLFSKSMDSL*rtss*y*inl*tsftshtsqlsrifismwclclen*k*
*sifir*c*fnvnlak*ywysi*srwwsf**ifyfw***stitiiiiiiiiw***kkykr
yyyds*krtkmyitkw*ykgi**sngifncsng*trc*n*fl*ki*ny**igcckfmvyi
q*er*ige**rf*tistke

Homology Contig-U13162-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13162-1 (Contig-U13162-1Q) /CSM_Contig/Conti...   793  0.0
Contig-U14871-1 (Contig-U14871-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14566-1 (Contig-U14566-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14261-1 (Contig-U14261-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01045-1 (Contig-U01045-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12134-1 (Contig-U12134-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12019-1 (Contig-U12019-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti...    36  0.081

Homology Contig-U13162-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ421909) Dictyostelium discoideum cDNA clone:ddv44a09, 5' ...   672   0.0    3
(BJ378391) Dictyostelium discoideum cDNA clone:ddc31d24, 3' ...   381   0.0    4
(BJ426624) Dictyostelium discoideum cDNA clone:ddv59m14, 5' ...   412   0.0    2
(GR568062) CBTF3597.b1 CBTF Dictyostelium purpureum 12 hr ve...   129   e-100  5
(BJ371311) Dictyostelium discoideum cDNA clone:ddc57p11, 5' ...   331   5e-91  2
(BJ384607) Dictyostelium discoideum cDNA clone:ddc50g06, 3' ...   172   5e-69  2
(GR566538) CBTF2390.b1 CBTF Dictyostelium purpureum 12 hr ve...   260   1e-64  1
(AC181787) Strongylocentrotus purpuratus clone R3-1030C18, W...    50   0.20   1
(AX345334) Sequence 405 from Patent WO0200928.                     36   0.66   3
(AC087327) Trypanosoma brucei chromosome 4 clone RPCI93-3I12...    48   0.79   1

Homology Contig-U13162-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AK226969_1(AK226969|pid:none) Arabidopsis thaliana mRNA for hypo...   106   2e-32
BT002482_1(BT002482|pid:none) Arabidopsis thaliana putative prot...   106   2e-32
AK098954_1(AK098954|pid:none) Oryza sativa Japonica Group cDNA c...   103   7e-31
AK226971_1(AK226971|pid:none) Arabidopsis thaliana mRNA for hypo...   101   1e-30
AB028621_9(AB028621|pid:none) Arabidopsis thaliana genomic DNA, ...    94   3e-28
AK072300_1(AK072300|pid:none) Oryza sativa Japonica Group cDNA c...    96   4e-20
AC078948_16(AC078948|pid:none) Oryza sativa chromosome 10 BAC OS...    98   6e-19
AK027884_1(AK027884|pid:none) Homo sapiens cDNA FLJ14978 fis, cl...    90   6e-18
(Q9HCG7) RecName: Full=Non-lysosomal glucosylceramidase;        ...    90   2e-17
AB046825_1(AB046825|pid:none) Homo sapiens mRNA for KIAA1605 pro...    90   2e-17