Dictyostelium discoideum cDNA Contig-U13141-1

Assembled

Chromosomal Location of Contig-U13141-1

Sequence Contig-U13141-1

AGGAAATTGG GATGAATCAA AAGCCACCAA ATTAACCTAC TGCGATAATG
GAGATTGGGA AACTTTAATT CAATTTCCAG CATCAAACAA TAAAGTAGAT
TATAAATACT TTGTTATGGA TACTAATGGT GAAAAGATTT GGGAGAGTGG
TTCAAACCGT ACCTTTAATT TAAATGATTT AAATTCAAAT TATATTCATG
AATTTAGAGA TACTTATCAA AGTCCAACAT CAGCTGAAAA TACTTATTTG
AATTCTTCAT TCTTTAGAGA AGTACTCTTT GGAAGAGAAA ATCCAACTCA
ATATTCTTTA ATTAAACAAA CTCAAGCTGA TAAAGTTATA ATTCATTTCC
AAGTTAAATC AACATATGTA CCACCAAATC ATTCAATTTA TATTGTTGGT
AGTAATACAC AATTAGGTAA TTGGAGAACA GATAGAGCAG TTAAATTAAG
TGATGAAAGT TATCCAATTT GGAAAGTTGA TTTAGAGTTT TCAAAAGATC
AATTACCATT CTCTTATAAA TATATTATTG CCGATAAGAT TAAATCAGTT
GTTCATTGGG AATATGGTAA TGATAGATGG TTCACAGCAA GTGCCACTCA
TGCAAGTGAA TATTCAAGTA CCACCAATGA GGATCGTGAT TTCTTCTTTA
ACGATGGTGA ATTTAAGGAT AGTCAATTAT TAAGAAGCGC AGGTGTTGCA
GTACCAATCT TCTCATTAAG AAGTAAACAA GGTTTAGGTA TTGGTGAATT
CAACGATTTA CATCAATTGG TGGATTGGTC ACATCAATCA GGACTTCATA
TGATTCAAAT ATTGCCAATC AATGATACCA CCGTCTATTA TACATGGAGA
GATAGTTATC CATATAGTTC TGTATCGGTT TATGCACTTC ATCCAATTTA
TATTCACATT GATTCAATAA CCAAGGA

Translated Amino Acid Sequence Contig-U13141-1

GNWDESKATKLTYCDNGDWETLIQFPASNNKVDYKYFVMDTNGEKIWESGSNRTFNLNDL
NSNYIHEFRDTYQSPTSAENTYLNSSFFREVLFGRENPTQYSLIKQTQADKVIIHFQVKS
TYVPPNHSIYIVGSNTQLGNWRTDRAVKLSDESYPIWKVDLEFSKDQLPFSYKYIIADKI
KSVVHWEYGNDRWFTASATHASEYSSTTNEDRDFFFNDGEFKDSQLLRSAGVAVPIFSLR
SKQGLGIGEFNDLHQLVDWSHQSGLHMIQILPINDTTVYYTWRDSYPYSSVSVYALHPIY
IHIDSITK

Homology Contig-U13141-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13141-1 (Contig-U13141-1Q) /CSM_Contig/Conti...  1838  0.0
Contig-U09315-1 (Contig-U09315-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U05670-1 (Contig-U05670-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U11274-1 (Contig-U11274-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U09510-1 (Contig-U09510-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U03272-1 (Contig-U03272-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U14773-1 (Contig-U14773-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U11323-1 (Contig-U11323-1Q) /CSM_Contig/Conti...    34  0.26

Homology Contig-U13141-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ425232) Dictyostelium discoideum cDNA clone:ddv55e03, 5' ...  1251   0.0    1
(BJ370881) Dictyostelium discoideum cDNA clone:ddc55f21, 5' ...  1168   0.0    1
(BJ424204) Dictyostelium discoideum cDNA clone:ddv51p15, 5' ...  1144   0.0    1
(BJ424262) Dictyostelium discoideum cDNA clone:ddv51k22, 5' ...  1090   0.0    1
(BJ424909) Dictyostelium discoideum cDNA clone:ddv54b05, 5' ...   918   0.0    1
(GR573635) CBXU1603.b1 CBXU Dictyostelium purpureum 6 hr veg...   230   e-128  6
(GR583547) CCAA1721.b1 CCAA Dictyostelium purpureum 0 hr sta...   222   e-123  8
(EJ798581) 1093017414333 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.12   2
(BJ366514) Dictyostelium discoideum cDNA clone:ddc39b08, 5' ...    32   0.15   3
(AC009387) Homo sapiens 12 BAC RP11-110L15 (Roswell Park Can...    38   0.22   4

Homology Contig-U13141-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000140_3(CP000140|pid:none) Parabacteroides distasonis ATCC 85...   174   3e-42
AY510449_1(AY510449|pid:none) Solanum tuberosum 4-alpha-glucanot...   173   7e-42
FJ664262_1(FJ664262|pid:none) Annona cherimola disproportionatin...   170   6e-41
AP010656_444(AP010656|pid:none) Candidatus Azobacteroides pseudo...   166   8e-40
AY081315_1(AY081315|pid:none) Arabidopsis thaliana 4-alpha-gluca...   161   3e-38
CR626927_3520(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...   159   1e-37
AP006841_3821(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...   156   8e-37
CP001577_181(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   133   7e-30
CP000139_1346(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...   129   2e-28
CR954211_230(CR954211|pid:none) Ostreococcus tauri strain OTTH05...   118   2e-25