Homology Contig-U13062-1 vs Protein
Query= Contig-U13062-1 (Contig-U13062-1Q) /CSM_Contig/Contig-U13062-1Q.Seq.d
(655 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 prot... 127 3e-28
AL606694_11(AL606694|pid:none) Oryza sativa genomic DNA, chromos... 69 9e-11
CR382136_201(CR382136|pid:none) Debaryomyces hansenii strain CBS... 69 9e-11
AE014298_3182(AE014298|pid:none) Drosophila melanogaster chromos... 68 3e-10
AM270237_2(AM270237|pid:none) Aspergillus niger contig An11c0200... 65 1e-09
AL035539_12(AL035539|pid:none) Arabidopsis thaliana DNA chromoso... 64 3e-09
AM475051_1(AM475051|pid:none) Vitis vinifera contig VV78X161773.... 64 4e-09
BT009977_1(BT009977|pid:none) Drosophila melanogaster RE56428 fu... 63 7e-09
AE014134_1855(AE014134|pid:none) Drosophila melanogaster chromos... 63 7e-09
AM920435_1530(AM920435|pid:none) Penicillium chrysogenum Wiscons... 63 7e-09
FN357386_11(FN357386|pid:none) Schistosoma mansoni genome sequen... 63 9e-09
AE017345_256(AE017345|pid:none) Cryptococcus neoformans var. neo... 61 3e-08
AF503634_1(AF503634|pid:none) Felis catus Niemann-Pick C1 mRNA, ... 60 4e-08
AF258783_1(AF258783|pid:none) Felis catus Niemann-Pick type C1 d... 60 4e-08
FM992688_1311(FM992688|pid:none) Candida dubliniensis CD36 chrom... 59 1e-07
BC131788_1(BC131788|pid:none) Mus musculus NPC1-like 1, mRNA (cD... 59 1e-07
(Q6T3U4) RecName: Full=Niemann-Pick C1-like protein 1; Flags: Pr... 59 1e-07
AB209048_1(AB209048|pid:none) Homo sapiens mRNA for Niemann-Pick... 58 2e-07
AK293779_1(AK293779|pid:none) Homo sapiens cDNA FLJ51802 complet... 58 2e-07
BC063302_1(BC063302|pid:none) Homo sapiens Niemann-Pick disease,... 58 2e-07
AC007534_1(AC007534|pid:none) Genomic sequence for Arabidopsis t... 58 3e-07
AF182744_1(AF182744|pid:none) Cricetulus griseus Niemann-Pick ty... 58 3e-07
(Q6T3U3) RecName: Full=Niemann-Pick C1-like protein 1; Flags: Pr... 57 4e-07
BC151276_1(BC151276|pid:none) Bos taurus Niemann-Pick disease, t... 57 6e-07
AF299073_1(AF299073|pid:none) Bos taurus Niemann-Pick type C1 di... 57 6e-07
CS723370_1(CS723370|pid:none) Sequence 1 from Patent WO200710080... 56 8e-07
AY437865_1(AY437865|pid:none) Homo sapiens Niemann-Pick C1-like ... 56 8e-07
BC143756_1(BC143756|pid:none) Homo sapiens NPC1 (Niemann-Pick di... 56 8e-07
AK154282_1(AK154282|pid:none) Mus musculus NOD-derived CD11c +ve... 55 1e-06
(P56941) RecName: Full=Niemann-Pick C1 protein; Flags: Precursor... 54 3e-06
CR954216_208(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 51 3e-05
EU886296_1(EU886296|pid:none) Monodelphis domestica Niemann-Pick... 49 2e-04
CP001333_215(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 46 8e-04
U28733_1(U28733|pid:none) Caenorhabditis elegans cosmid C54A12, ... 45 0.001
AF409095_1(AF409095|pid:none) Gallus gallus patched 2 (PTC2) mRN... 42 0.016
EF100663_1(EF100663|pid:none) Leucoraja erinacea patched 2 (Ptc2... 42 0.021
EU814484_1(EU814484|pid:none) Scyliorhinus canicula patched 2 (p... 42 0.021
AE016820_361(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 41 0.027
CR382129_773(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 41 0.035
AB037686_1(AB037686|pid:none) Xenopus laevis Xptch-1 mRNA for pa... 40 0.046
AF302765_1(AF302765|pid:none) Xenopus laevis patched-1 (Ptc1) mR... 40 0.046
(Q61115) RecName: Full=Protein patched homolog 1; Short... 40 0.060
AL032639_3(AL032639|pid:none) Caenorhabditis elegans YAC Y38F1A,... 40 0.060
U59464_1(U59464|pid:none) Human PATCHED protein (PTC) mRNA, comp... 40 0.060
(Q90693) RecName: Full=Protein patched homolog 1; Short... 40 0.060
AY357891_1(AY357891|pid:none) Rattus norvegicus patched mRNA, co... 40 0.060
(Q13635) RecName: Full=Protein patched homolog 1; Short... 40 0.060
CR382329_1(CR382329|pid:none) Zebrafish DNA sequence from clone ... 39 0.13
AY395768_1(AY395768|pid:none) Homo sapiens patched gene, exon 18... 39 0.13
T25600(T25600) hypothetical protein C32E8.8 - Caenorhabditis ele... 39 0.17
(Q9Y6C5) RecName: Full=Protein patched homolog 2; Short... 38 0.30
AY358555_1(AY358555|pid:none) Homo sapiens clone DNA35621 Patche... 38 0.30
(O35595) RecName: Full=Protein patched homolog 2; Short... 38 0.30
AF087651_1(AF087651|pid:none) Homo sapiens patched 2 (PTCH2) mRN... 38 0.30
T15961(T15961)hypothetical protein F02E8.6 - Caenorhabditis eleg... 37 0.39
(Q19127) RecName: Full=Niemann-Pick C1 protein homolog 1; Flags:... 37 0.39
AY887138_1(AY887138|pid:none) Ambystoma mexicanum patched-1 (ptc... 37 0.51
AB188226_1(AB188226|pid:none) Meriones unguiculatus ptc mRNA for... 37 0.66
CP001141_266(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 34 3.3
CP001575_510(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 34 3.3
(A0JPH4) RecName: Full=Sterol regulatory element-binding protein... 33 5.6
(Q09614) RecName: Full=Protein patched homolog 1; &Z46812_1(Z46... 33 5.6
AJ851592_1(AJ851592|pid:none) Gallus gallus mRNA for hypothetica... 33 5.6
BC072950_1(BC072950|pid:none) Xenopus laevis hypothetical protei... 33 5.6
T27969(T27969)hypothetical protein ZK675.1 - Caenorhabditis eleg... 33 5.6
(Q5MNU5) RecName: Full=Sterol regulatory element-binding protein... 33 7.3
AK027402_1(AK027402|pid:none) Homo sapiens cDNA FLJ14496 fis, cl... 33 9.6
(A2RRU4) RecName: Full=Sterol regulatory element-binding protein... 33 9.6
D83782_1(D83782|pid:none) Human mRNA for KIAA0199 gene, partial ... 33 9.6
BC027207_1(BC027207|pid:none) Homo sapiens SREBF chaperone, mRNA... 33 9.6
AK172912_1(AK172912|pid:none) Mus musculus premature mRNA for mK... 33 9.6
>AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 protein
mRNA, complete cds. &AF202726_1(AF202726|pid:none)
Length = 1342
Score = 127 bits (319), Expect = 3e-28
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Frame = +3
Query: 84 LIILVNTFESLHVAXXXXXXXXXGFNQNHHQMPTPEESFARTLAKVGPXXXXXXXXXXXX 263
+ I+VNTFESLHV + +PT E+S ARTLAKVGP
Sbjct: 749 IFIIVNTFESLHVVRYDP-------HTRAAILPTSEDSLARTLAKVGPSIALASLSESLA 801
Query: 264 XXXXXXTKMPAVKAFSFYASIAVFFDFLLQISAFACLLVLDTKRLQSRRVDCLPCLSL-N 440
TKMPAV+AFS+YA++A+F DFLLQ+SAF+ LLVLD+KR SRR+DCLPC++L +
Sbjct: 802 FLLGSLTKMPAVQAFSYYAALAIFVDFLLQVSAFSALLVLDSKRASSRRIDCLPCIALED 861
Query: 441 GDNSDLEDD 467
GDNSD+EDD
Sbjct: 862 GDNSDMEDD 870
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 559,062,614
Number of extensions: 7298636
Number of successful extensions: 17851
Number of sequences better than 10.0: 71
Number of HSP's gapped: 17839
Number of HSP's successfully gapped: 71
Length of query: 218
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 94
Effective length of database: 649,847,548
Effective search space: 61085669512
Effective search space used: 61085669512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Dictyostelium discoideum cDNA Project Home