Dictyostelium discoideum cDNA Contig-U13062-1

Assembled

Chromosomal Location of Contig-U13062-1

Sequence Contig-U13062-1

---------- TGGTATTTGT ATAGTTGCAT GTTCAATTAT AATCTCTGTT
GGTATTTGTT CAATTCTACG TATAAAAGCA ACTCTAATCA TTTTAGTAAA
TACTTTTGAA TCTTTACATG TTGCATCATC ATCATCATCA TCATCAATTA
GTGGTTTTAA TCAAAATCAT CATCAAATGC CAACACCAGA AGAATCATTT
GCTCGTACAC TTGCAAAGGT TGGTCCATCA ATTGCATTAG CATCATTAAG
TGAATCATTT GCTTTCCTAT TAGGTTCCTT AACTAAAATG CCAGCAGTAA
AAGCATTTTC ATTCTATGCT TCAATTGCAG TTTTCTTTGA CTTCCTATTA
CAAATTAGTG CATTCGCTTG TTTATTAGTT TTAGATACAA AACGTTTACA
ATCAAGAAGA GTTGATTGTT TACCATGCTT ATCATTAAAT GGTGATAATT
CAGATTTAGA AGATGATCCA TTTGATAATA TTGATCAACA ATTAAATAGT
AATAATAATA ATAATAATAA TAATCTTAAT AACAATGATA ACAATAATAA
TAATAATCAA GAAGAAATTG AAAATGAACC ACTTTTAATT AATGGTGAAG
ATGATGATAG AAATGATAAT GCTCATAATT TTAATTATGA TGTTGATGCA
TTAAA

Translated Amino Acid Sequence Contig-U13062-1

XXXGICIVACSIIISVGICSILRIKATLIILVNTFESLHVASSSSSSSISGFNQNHHQMP
TPEESFARTLAKVGPSIALASLSESFAFLLGSLTKMPAVKAFSFYASIAVFFDFLLQISA
FACLLVLDTKRLQSRRVDCLPCLSLNGDNSDLEDDPFDNIDQQLNSNNNNNNNNLNNNDN
NNNNNQEEIENEPLLINGEDDDRNDNAHNFNYDVDAL

Homology Contig-U13062-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13062-1 (Contig-U13062-1Q) /CSM_Contig/Conti...   622  e-178
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti...   622  e-178
Contig-U11923-1 (Contig-U11923-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10415-1 (Contig-U10415-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10541-1 (Contig-U10541-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13229-1 (Contig-U13229-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U11448-1 (Contig-U11448-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U04901-1 (Contig-U04901-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U14024-1 (Contig-U14024-1Q) /CSM_Contig/Conti...    34  0.18

Homology Contig-U13062-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ382564) Dictyostelium discoideum cDNA clone:ddc45l06, 3' ...   617   0.0    3
(BJ378770) Dictyostelium discoideum cDNA clone:ddc32d23, 3' ...   617   0.0    4
(BJ405069) Dictyostelium discoideum cDNA clone:dds30c14, 3' ...   617   0.0    4
(BJ408529) Dictyostelium discoideum cDNA clone:dds46j05, 3' ...   617   0.0    4
(BJ378301) Dictyostelium discoideum cDNA clone:ddc31a16, 3' ...   617   0.0    4
(BJ379910) Dictyostelium discoideum cDNA clone:ddc36l10, 3' ...   609   0.0    4
(BJ409263) Dictyostelium discoideum cDNA clone:dds40h08, 3' ...   617   0.0    3
(BJ383019) Dictyostelium discoideum cDNA clone:ddc46h18, 3' ...   565   0.0    3
(BJ384163) Dictyostelium discoideum cDNA clone:ddc48a13, 3' ...   410   e-161  2
(BJ440183) Dictyostelium discoideum cDNA clone:ddv42l23, 3' ...   242   1e-59  1

Homology Contig-U13062-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 prot...   127   3e-28
AL606694_11(AL606694|pid:none) Oryza sativa genomic DNA, chromos...    69   9e-11
CR382136_201(CR382136|pid:none) Debaryomyces hansenii strain CBS...    69   9e-11
AE014298_3182(AE014298|pid:none) Drosophila melanogaster chromos...    68   3e-10
AM270237_2(AM270237|pid:none) Aspergillus niger contig An11c0200...    65   1e-09
AL035539_12(AL035539|pid:none) Arabidopsis thaliana DNA chromoso...    64   3e-09
AM475051_1(AM475051|pid:none) Vitis vinifera contig VV78X161773....    64   4e-09
BT009977_1(BT009977|pid:none) Drosophila melanogaster RE56428 fu...    63   7e-09
AE014134_1855(AE014134|pid:none) Drosophila melanogaster chromos...    63   7e-09
AM920435_1530(AM920435|pid:none) Penicillium chrysogenum Wiscons...    63   7e-09