Homology Contig-U13062-1 vs DNA
Query= Contig-U13062-1 (Contig-U13062-1Q) /CSM_Contig/Contig-U13062-1Q.Seq.d
(655 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ382564) Dictyostelium discoideum cDNA clone:ddc45l06, 3' ... 617 0.0 3
(BJ378770) Dictyostelium discoideum cDNA clone:ddc32d23, 3' ... 617 0.0 4
(BJ405069) Dictyostelium discoideum cDNA clone:dds30c14, 3' ... 617 0.0 4
(BJ408529) Dictyostelium discoideum cDNA clone:dds46j05, 3' ... 617 0.0 4
(BJ378301) Dictyostelium discoideum cDNA clone:ddc31a16, 3' ... 617 0.0 4
(BJ379910) Dictyostelium discoideum cDNA clone:ddc36l10, 3' ... 609 0.0 4
(BJ409263) Dictyostelium discoideum cDNA clone:dds40h08, 3' ... 617 0.0 3
(BJ383019) Dictyostelium discoideum cDNA clone:ddc46h18, 3' ... 565 0.0 3
(BJ384163) Dictyostelium discoideum cDNA clone:ddc48a13, 3' ... 410 e-161 2
(BJ440183) Dictyostelium discoideum cDNA clone:ddv42l23, 3' ... 242 1e-59 1
(BJ386029) Dictyostelium discoideum cDNA clone:ddc56n20, 3' ... 159 2e-40 2
(BJ362121) Dictyostelium discoideum cDNA clone:ddc20i12, 5' ... 129 1e-26 2
(AF202725) Dictyostelium discoideum NPC1 protein mRNA, compl... 129 1e-25 2
(AF202726) Dictyostelium discoideum NPC1 protein gene, compl... 129 1e-25 2
(BJ360383) Dictyostelium discoideum cDNA clone:ddc5h22, 5' e... 129 2e-25 1
(GR567449) CBTF3113.b1 CBTF Dictyostelium purpureum 12 hr ve... 98 1e-24 3
(BJ359736) Dictyostelium discoideum cDNA clone:ddc2a10, 5' e... 119 1e-22 1
(BJ370002) Dictyostelium discoideum cDNA clone:ddc52f20, 5' ... 117 6e-22 1
(GR584470) CCAA2453.b1 CCAA Dictyostelium purpureum 0 hr sta... 46 3e-06 3
(GR584194) CCAA2237.b1 CCAA Dictyostelium purpureum 0 hr sta... 42 4e-05 3
(GR566365) CBTF2272.b1 CBTF Dictyostelium purpureum 12 hr ve... 42 0.019 2
(DJ127135) Type2 diabetes susceptibility genes, and use ther... 48 0.44 1
(Z76736) Human DNA sequence from clone RP1-75E8 on chromosom... 48 0.44 1
(AF411849) Homo sapiens USH3 region, partial sequence. 48 0.44 1
(AC078816) Homo sapiens 3 BAC RP11-600P18 (Roswell Park Canc... 48 0.44 1
(AC078919) Homo sapiens chromosome 3 clone RP11-240E23, WORK... 48 0.44 1
(ET727363) CHO_OF852xa18r1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.44 1
(EK408077) 1095505098397 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.44 1
(BX952085) Homo sapiens mRNA; EST DKFZp781B18181_r1 (from c... 48 0.44 1
(AC198459) Gallus gallus BAC clone CH261-24H19 from chromoso... 40 0.95 4
(EJ501888) 1095403640099 Global-Ocean-Sampling_GS-28-01-01-1... 44 1.0 2
(AU073752) Dictyostelium discoideum slug cDNA, clone SSI276. 36 1.1 2
(CB830079) ri13a06.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel... 46 1.8 1
(EX753505) RR1CS61JQ RR1(CS) Raphanus raphanistrum subsp. ma... 46 1.8 1
(BJ386081) Dictyostelium discoideum cDNA clone:ddc57h04, 3' ... 36 2.6 2
(BJ399071) Dictyostelium discoideum cDNA clone:dds3p19, 3' e... 36 2.6 2
(BJ359563) Dictyostelium discoideum cDNA clone:ddc15j11, 5' ... 36 2.9 2
(AU062097) Dictyostelium discoideum slug cDNA, clone SLH565. 36 3.2 2
(AC178206) Strongylocentrotus purpuratus clone R3-3085F04, W... 32 3.5 2
(DU861398) 67957 Tomato HindIII BAC Library Solanum lycopers... 42 3.6 2
(DU087629) 32012 Tomato HindIII BAC Library Solanum lycopers... 42 4.0 2
(DU043233) 159743 Tomato HindIII BAC Library Solanum lycoper... 42 4.1 2
(AC179837) Strongylocentrotus purpuratus clone R3-1012C5, WO... 44 4.5 3
(DW159039) CLVY11158.b1_K05.ab1 CLV(XYZ) lettuce virosa Lact... 32 4.5 2
(BJ340097) Dictyostelium discoideum cDNA clone:dda11j17, 3' ... 34 4.6 2
(DW146873) CLVX11968.b1_O15.ab1 CLV(XYZ) lettuce virosa Lact... 32 4.6 2
(AY232270) Dictyostelium discoideum putative protein Roco8 (... 38 5.7 2
(CR749768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 6.0 3
(BX469936) Zebrafish DNA sequence from clone DKEY-32I12 in l... 44 6.9 1
(AC147291) Pan troglodytes BAC clone RP43-74J18 from chromos... 44 6.9 1
(CU570969) M.truncatula DNA sequence from clone MTH2-75D5 on... 44 6.9 1
(AF472609) Helianthus annuus carbohydrate oxidase gene, comp... 44 6.9 1
(AC154035) Medicago truncatula clone mth2-114l13, complete s... 44 6.9 1
(AC152178) Medicago truncatula clone mth2-14b12, complete se... 44 6.9 1
(BD222045) Pathogen-inducible promoter. 44 6.9 1
(AX015679) Sequence 15 from Patent WO9950428. 44 6.9 1
(AR237795) Sequence 15 from patent US 6465636. 44 6.9 1
(CT990470) Pig DNA sequence from clone CH242-257H3 on chromo... 44 6.9 1
(FJ770081) Homo sapiens chromosome 7 PCR sequence PCR_NA1895... 44 6.9 1
(BX119919) Human DNA sequence from clone RP11-987D21 on chro... 44 6.9 1
(AC232312) Homo sapiens FOSMID clone ABC9-45917700B11 from c... 44 6.9 1
(AC083803) Homo sapiens 3q BAC RP11-142C12 (Roswell Park Can... 44 6.9 1
(AC004454) Homo sapiens PAC clone RP5-988L12 from 7, complet... 44 6.9 1
(CU633651) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.9 1
(AC073631) Homo sapiens chromosome 3 clone RP11-195H14, *** ... 44 6.9 1
(AC184528) Strongylocentrotus purpuratus clone R3-3110F15, W... 44 6.9 1
(AC176560) Strongylocentrotus purpuratus clone R3-3076I12, W... 44 6.9 1
(AC013585) Homo sapiens clone RP11-7E2, LOW-PASS SEQUENCE SA... 44 6.9 1
(AQ636727) RPCI-11-479C17.TJ RPCI-11 Homo sapiens genomic cl... 44 6.9 1
(FH959772) CHO_OF6771xe06r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 6.9 1
(FH632631) CHO_OF4584xa14f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.9 1
(EK301830) 1095462367431 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.9 1
(EJ027159) 1095454029917 Global-Ocean-Sampling_GS-26-01-01-1... 44 6.9 1
(B71274) RPCI11-7E2.TP RPCI-11 Homo sapiens genomic clone RP... 44 6.9 1
(GR211279) MMHEP11A03 hard clam SMART cDNA library from hepa... 44 6.9 1
(GE562500) CCHT20512.b1_P15.ab1 CCHT Niger Seed Guizotia aby... 44 6.9 1
(EU058709) Uncultured bacterium clone LM0ABA35ZF11FM1 genomi... 44 6.9 1
(AC123571) Medicago truncatula clone mth1-14n3, complete seq... 34 7.1 3
(AC153700) Bos taurus clone CH240-9N14, WORKING DRAFT SEQUEN... 34 8.5 5
(CU466335) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 8.6 5
(AM455825) Vitis vinifera contig VV78X089944.9, whole genome... 36 9.1 3
>(BJ382564) Dictyostelium discoideum cDNA clone:ddc45l06, 3' end,
single read.
Length = 646
Score = 617 bits (311), Expect(3) = 0.0
Identities = 311/311 (100%)
Strand = Plus / Minus
Query: 179 gccaacaccagaagaatcatttgctcgtacacttgcaaaggttggtccatcaattgcatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gccaacaccagaagaatcatttgctcgtacacttgcaaaggttggtccatcaattgcatt 419
Query: 239 agcatcattaagtgaatcatttgctttcctattaggttccttaactaaaatgccagcagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agcatcattaagtgaatcatttgctttcctattaggttccttaactaaaatgccagcagt 359
Query: 299 aaaagcattttcattctatgcttcaattgcagttttctttgacttcctattacaaattag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaaagcattttcattctatgcttcaattgcagttttctttgacttcctattacaaattag 299
Query: 359 tgcattcgcttgtttattagttttagatacaaaacgtttacaatcaagaagagttgattg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgcattcgcttgtttattagttttagatacaaaacgtttacaatcaagaagagttgattg 239
Query: 419 tttaccatgcttatcattaaatggtgataattcagatttagaagatgatccatttgataa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttaccatgcttatcattaaatggtgataattcagatttagaagatgatccatttgataa 179
Query: 479 tattgatcaac 489
|||||||||||
Sbjct: 178 tattgatcaac 168
Score = 224 bits (113), Expect(3) = 0.0
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 11 tggtatttgtatagttgcatgttcaattataatctctgttggtatttgttcaattctacg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tggtatttgtatagttgcatgttcaattataatctctgttggtatttgttcaattctacg 587
Query: 71 tataaaagcaactctaatcattttagtaaatacttttgaatctttacatgttg 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tataaaagcaactctaatcattttagtaaatacttttgaatctttacatgttg 534
Score = 194 bits (98), Expect(3) = 0.0
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 558 caagaagaaattgaaaatgaaccacttttaattaatggtgaagatgatgatagaaatgat 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 caagaagaaattgaaaatgaaccacttttaattaatggtgaagatgatgatagaaatgat 40
Query: 618 aatgctcataattttaattatgatgttgatgcattaaa 655
||||||||||||||||||||||||||||||||||||||
Sbjct: 39 aatgctcataattttaattatgatgttgatgcattaaa 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 710,536,020
Number of extensions: 42464396
Number of successful extensions: 3360003
Number of sequences better than 10.0: 81
Length of query: 655
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 631
Effective length of database: 104,103,628,548
Effective search space: 65689389613788
Effective search space used: 65689389613788
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home