Homology Contig-U13060-1 vs DNA
Query= Contig-U13060-1 (Contig-U13060-1Q) /CSM_Contig/Contig-U13060-1Q.Seq.d
(768 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ382486) Dictyostelium discoideum cDNA clone:ddc44l21, 3' ... 882 0.0 3
(AF134170) Dictyostelium discoideum retrotransposon TRE3-B, ... 700 0.0 4
(U46205) Dictyostelium tRNA-Phe and flanking repetitive elem... 708 0.0 4
(AF067199) Dictyostelium discoideum clone 9.2 tRNA-Val gene,... 119 1e-23 2
(M24064) D.discoideum Val-tRNA gene, clone lambda-ValGUU13. 54 9e-13 2
(AC206802) Echinops telfairi clone CH238-381E3, WORKING DRAF... 50 0.13 1
(AC197313) Echinops telfairi clone CH238-350L1, WORKING DRAF... 50 0.13 1
(AA193767) rs02g12.r1 Sommer Pristionchus Pristionchus pacif... 48 0.52 1
(AP002460) Arabidopsis thaliana genomic DNA, chromosome 3, B... 44 1.5 3
(BX842692) Zebrafish DNA sequence from clone DKEY-71H2 in li... 38 1.7 4
(CU693370) Zebrafish DNA sequence from clone CH73-332C20 in ... 46 2.1 1
(AL592550) Zebrafish DNA sequence from clone BUSM1-18F12 in ... 46 2.1 1
(AL591481) Zebrafish DNA sequence from clone BUSM1-101L20 in... 46 2.1 1
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 46 2.1 1
(BX539319) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 2.1 1
(AL672279) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.1 1
(AL591513) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.1 1
(CT762736) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.1 1
(CW252482) 104_715_11224528_116_35095_054 Sorghum methylatio... 36 4.3 2
(CW042499) 104_276_10507138_116_30487 Sorghum methylation fi... 36 4.5 2
(CW423268) fsbb001f132p24f0 Sorghum methylation filtered lib... 36 4.6 2
(CU459060) Zebrafish DNA sequence from clone CH73-161C15 in ... 44 8.2 1
(CU234114) Zebrafish DNA sequence from clone DKEY-223L5 in l... 44 8.2 1
(Y08010) A.thaliana lectin receptor kinase gene. 44 8.2 1
(U93161) Arabidopsis thaliana AthlecRK4 pseudogene, complete... 44 8.2 1
(AL163491) Arabidopsis thaliana DNA chromosome 5, BAC clone ... 44 8.2 1
(AL138659) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 44 8.2 1
(AL137898) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 44 8.2 1
(AC079604) Arabidopsis thaliana chromosome 1 BAC T15M6 genom... 44 8.2 1
(AC079131) Arabidopsis thaliana chromosome 1 BAC T18I24 geno... 44 8.2 1
(AC073555) Arabidopsis thaliana chromosome 1 BAC F11I4 genom... 44 8.2 1
(AC013482) Genomic sequence for Arabidopsis thaliana BAC T26... 44 8.2 1
(AC007259) Arabidopsis thaliana chromosome I BAC T28P6 genom... 44 8.2 1
(CT827945) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.2 1
(AC191411) Zea mays chromosome 1 clone ZMMBBb-229E16; ZMMBBb... 44 8.2 1
(AC177855) Zea mays chromosome 1 clone CH201-316H5; ZMMBBc03... 44 8.2 1
(AC174848) Colobus guereza clone CH272-187N9, WORKING DRAFT ... 44 8.2 1
(AC174407) Colobus guereza clone CH272-418K20, WORKING DRAFT... 44 8.2 1
(EK139020) 1095454061312 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.2 1
(EJ333174) 1092963456207 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.2 1
(EJ075436) 1095458119431 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.2 1
(AL091902) Arabidopsis thaliana genome survey sequence SP6 e... 44 8.2 1
(CZ824982) OC__Ba0204L10.f OC__Ba Oryza coarctata genomic cl... 44 8.2 1
(CZ797652) OC__Ba0167N12.f OC__Ba Oryza coarctata genomic cl... 44 8.2 1
(CT431699) Sus scrofa genomic clone CH242-470I18, genomic su... 44 8.2 1
(CT201348) Sus scrofa genomic clone CH242-213A8, genomic sur... 44 8.2 1
(CL484063) SAIL_390_E12.v1 SAIL Collection Arabidopsis thali... 44 8.2 1
(CG151257) PUIAX92TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 8.2 1
(CG111019) PUJBR42TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 8.2 1
(CE525450) tigr-gss-dog-17000365750809 Dog Library Canis lup... 44 8.2 1
(CC678610) OGHAE02TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 8.2 1
(CC652352) OGLAJ31TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 8.2 1
(BB692868) Mus musculus 2 days neonate sympathetic ganglion ... 44 8.2 1
>(BJ382486) Dictyostelium discoideum cDNA clone:ddc44l21, 3' end,
single read.
Length = 759
Score = 882 bits (445), Expect(3) = 0.0
Identities = 445/445 (100%)
Strand = Plus / Minus
Query: 14 tgatcaattagatgatatgttataatgtagcttttaaacggcaccagcatatgagtatgt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgatcaattagatgatatgttataatgtagcttttaaacggcaccagcatatgagtatgt 697
Query: 74 gacagtaaatgattcaattgatgtacaactggtgaatttggtgaggttgtttataattgc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gacagtaaatgattcaattgatgtacaactggtgaatttggtgaggttgtttataattgc 637
Query: 134 atcatttgcaagtttgggtgagtacgtttgaatgaatgttttaatgattgcataatcatt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atcatttgcaagtttgggtgagtacgtttgaatgaatgttttaatgattgcataatcatt 577
Query: 194 tgatgatatttcgaatctatagttgagtttgtcgatatttagtgcaagttggttttgaag 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgatgatatttcgaatctatagttgagtttgtcgatatttagtgcaagttggttttgaag 517
Query: 254 gttgattattgaagttaatttatcaacgttgcaatttacgaaggcagttgcactaattat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gttgattattgaagttaatttatcaacgttgcaatttacgaaggcagttgcactaattat 457
Query: 314 tttaaatgctgatggcgacagtatatcttcgaagagtttgtgaatgtttttgtgaatttg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tttaaatgctgatggcgacagtatatcttcgaagagtttgtgaatgtttttgtgaatttg 397
Query: 374 ttggattcttgtgtcatctttagaggctaattcttcacggatgtatggttgattaaagta 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttggattcttgtgtcatctttagaggctaattcttcacggatgtatggttgattaaagta 337
Query: 434 acacttaatgttgatggtgttattg 458
|||||||||||||||||||||||||
Sbjct: 336 acacttaatgttgatggtgttattg 312
Score = 256 bits (129), Expect(3) = 0.0
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 640 cgttatctgtatgatttgactgtaattcagttgagtgatcatcagccattgttgaaaagt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cgttatctgtatgatttgactgtaattcagttgagtgatcatcagccattgttgaaaagt 71
Query: 700 atataggacgatagcccttgctttactgagcaaaaatagggtaaaattaagaggaatgaa 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atataggacgatagcccttgctttactgagcaaaaatagggtaaaattaagaggaatgaa 11
Query: 760 tgtggtgaa 768
|||||||||
Sbjct: 10 tgtggtgaa 2
Score = 157 bits (79), Expect(3) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 466 ctaagaaggagagtggtcttgtgattgatggaggtgcaatgatatctaattgattatcaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctaagaaggagagtggtcttgtgattgatggaggtgcaatgatatctaattgattatcaa 245
Query: 526 gtcctttgttaagtgagaa 544
|||||||||||||||||||
Sbjct: 244 gtcctttgttaagtgagaa 226
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 761,908,652
Number of extensions: 41706819
Number of successful extensions: 3197092
Number of sequences better than 10.0: 53
Length of query: 768
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 744
Effective length of database: 104,103,628,548
Effective search space: 77453099639712
Effective search space used: 77453099639712
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home