Dictyostelium discoideum cDNA Contig-U13060-1

Assembled

Chromosomal Location of Contig-U13060-1

Sequence Contig-U13060-1

---------- GNGTGATCAA TTAGATGATA TGTTATAATG TAGCTTTTAA
ACGGCACCAG CATATGAGTA TGTGACAGTA AATGATTCAA TTGATGTACA
ACTGGTGAAT TTGGTGAGGT TGTTTATAAT TGCATCATTT GCAAGTTTGG
GTGAGTACGT TTGAATGAAT GTTTTAATGA TTGCATAATC ATTTGATGAT
ATTTCGAATC TATAGTTGAG TTTGTCGATA TTTAGTGCAA GTTGGTTTTG
AAGGTTGATT ATTGAAGTTA ATTTATCAAC GTTGCAATTT ACGAAGGCAG
TTGCACTAAT TATTTTAAAT GCTGATGGCG ACAGTATATC TTCGAAGAGT
TTGTGAATGT TTTTGTGAAT TTGTTGGATT CTTGTGTCAT CTTTAGAGGC
TAATTCTTCA CGGATGTATG GTTGATTAAA GTAACACTTA ATGTTGATGG
TGTTATTGTT TTTTTCTAAG AAGGAGAGTG GTCTTGTGAT TGATGGAGGT
GCAATGATAT CTAATTGATT ATCAAGTCCT TTGTTAAGTG AGAATTTGTT
TGTTGGGGTT TGTTTTTTAG GTGTGCCGAT TTTTGCACTT TTGTTTTTTG
TTGTTGAGGT TGTGGAGGTA TTATTTGTAT TGGTTGTGTC GTTATCTGTA
TGATTTGACT GTAATTCAGT TGAGTGATCA TCAGCCATTG TTGAAAAGTA
TATAGGACGA TAGCCCTTGC TTTACTGAGC AAAAATAGGG TAAAATTAAG
AGGAATGAAT GTGGTGAA

Translated Amino Acid Sequence Contig-U13060-1

xxxxvin*micynvafkrhqhmsm*q*miqlmynw*iw*gcl*lhhlqvwvstfe*mf**
lhnhlmifriys*vcrylvqvgfeg*llkliyqrcnlrrqlh*lf*mlmatvylrrvcec
fcefvgflchl*rlilhgcmvd*snt*c*wcycfflrrrvvl*lmevq*ylidyqvlc*v
ricllgfvf*VCRFLHFCFLLLRLWRYYLYWLCRYLYDLTVIQLSDHQPLLKSI*ddspc
fteqk*gkikrnecge

Homology Contig-U13060-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13060-1 (Contig-U13060-1Q) /CSM_Contig/Conti...  1045  0.0
Contig-U11933-1 (Contig-U11933-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U11427-1 (Contig-U11427-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U14399-1 (Contig-U14399-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U10152-1 (Contig-U10152-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U02377-1 (Contig-U02377-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12672-1 (Contig-U12672-1Q) /CSM_Contig/Conti...    32  0.84

Homology Contig-U13060-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ382486) Dictyostelium discoideum cDNA clone:ddc44l21, 3' ...   882   0.0    3
(AF134170) Dictyostelium discoideum retrotransposon TRE3-B, ...   700   0.0    4
(U46205) Dictyostelium tRNA-Phe and flanking repetitive elem...   708   0.0    4
(AF067199) Dictyostelium discoideum clone 9.2 tRNA-Val gene,...   119   1e-23  2
(M24064) D.discoideum Val-tRNA gene, clone lambda-ValGUU13.        54   9e-13  2
(AC206802) Echinops telfairi clone CH238-381E3, WORKING DRAF...    50   0.13   1
(AC197313) Echinops telfairi clone CH238-350L1, WORKING DRAF...    50   0.13   1
(AA193767) rs02g12.r1 Sommer Pristionchus Pristionchus pacif...    48   0.52   1
(AP002460) Arabidopsis thaliana genomic DNA, chromosome 3, B...    44   1.5    3
(BX842692) Zebrafish DNA sequence from clone DKEY-71H2 in li...    38   1.7    4

Homology Contig-U13060-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF134170_1(AF134170|pid:none) Dictyostelium discoideum retrotran...   343   1e-96
AB168339_1(AB168339|pid:none) Macaca fascicularis testis cDNA cl...    40   0.11
AE014188_81(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    39   0.24
AE016816_159(AE016816|pid:none) Ashbya gossypii (= Eremothecium ...    38   0.40
CR628337_2491(CR628337|pid:none) Legionella pneumophila str. Len...    37   0.53
(P50947) RecName: Full=Transcriptional regulatory protein PHO23;...    37   0.69
(O90760) RecName: Full=Putative ankyrin repeat protein FPV031;  ...    36   1.2
AK097402_1(AK097402|pid:none) Homo sapiens cDNA FLJ40083 fis, cl...    36   1.5
AE017354_2508(AE017354|pid:none) Legionella pneumophila subsp. p...    35   2.0
AE015450_384(AE015450|pid:none) Mycoplasma gallisepticum strain ...    35   2.6