Homology Contig-U13053-1 vs DNA
Query= Contig-U13053-1 (Contig-U13053-1Q) /CSM_Contig/Contig-U13053-1Q.Seq.d
(996 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ367636) Dictyostelium discoideum cDNA clone:ddc43n10, 5' ... 825 0.0 2
(BJ369010) Dictyostelium discoideum cDNA clone:ddc48o22, 5' ... 825 0.0 1
(BJ368735) Dictyostelium discoideum cDNA clone:ddc47k24, 5' ... 424 e-176 3
(BJ421390) Dictyostelium discoideum cDNA clone:ddv42p12, 5' ... 607 e-169 1
(GR567498) CBTF3149.b1 CBTF Dictyostelium purpureum 12 hr ve... 80 8e-32 4
(GR569892) CBTF772.b1 CBTF Dictyostelium purpureum 12 hr veg... 78 1e-20 2
(GR567875) CBTF3455.b1 CBTF Dictyostelium purpureum 12 hr ve... 62 4e-06 2
(BX466408) Anopheles gambiae EST, clone NAP1-P154-E-05-5. 48 0.007 2
(BX620432) Anopheles gambiae EST, clone ANGNP1022A06T7. 48 0.010 2
(BJ401785) Dictyostelium discoideum cDNA clone:dds19k10, 3' ... 40 0.032 2
(EK364252) 1095469390577 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.044 1
(FI298503) AdH1151-CPY2-H12TF AdH1 Arachis duranensis genomi... 44 0.045 2
(AC109146) Mus musculus chromosome 8, clone RP23-54G23, comp... 50 0.17 1
(AC140050) Mus musculus clone RP23-412H11, WORKING DRAFT SEQ... 50 0.17 1
(FP340240) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.17 1
(AQ487936) RPCI-11-260F11.TV RPCI-11 Homo sapiens genomic cl... 32 0.24 4
(BJ398824) Dictyostelium discoideum cDNA clone:dds2d14, 3' e... 36 0.50 2
(AU073759) Dictyostelium discoideum slug cDNA, clone SSI301. 36 0.52 2
(BJ392814) Dictyostelium discoideum cDNA clone:dds29e02, 5' ... 36 0.56 3
(GR774188) CBWO5129.b1 CBWO Melampsora larici-populina germi... 40 0.57 2
(CU633611) Zebrafish DNA sequence from clone CH211-128J1 in ... 48 0.69 1
(CQ870195) Sequence 616 from Patent WO2004074320. 48 0.69 1
(GC699619) Sequence 14864 from patent US 6812339. 48 0.69 1
(GC697042) Sequence 12287 from patent US 6812339. 48 0.69 1
(AB195143) Nasutitermes takasagoensis Nts13-3 mRNA for hypot... 48 0.69 1
(AL731556) Human DNA sequence from clone RP11-428P16 on chro... 48 0.69 1
(AL096868) Human DNA sequence from clone RP3-493D19 on chrom... 48 0.69 1
(AC148477) Homo sapiens 12 BAC RP13-895J2 (Roswell Park Canc... 48 0.69 1
(AC000112) Human PAC clone DJ149P21, complete sequence. 48 0.69 1
(AC179779) Strongylocentrotus purpuratus clone R3-1015J15, W... 48 0.69 1
(AC173980) Strongylocentrotus purpuratus clone R3-14E12, WOR... 48 0.69 1
(AC013420) Homo sapiens clone RP11-619F23, WORKING DRAFT SEQ... 48 0.69 1
(EJ425586) 1093012270557 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.69 1
(DW236608) GH_RTMF_06R_C09_InvR_27Jul04_075_F Root (free) - ... 48 0.69 1
(DN249122) ACAE-aaa35m16.b1 Hydra EST UCI 5 Hydra magnipapil... 48 0.69 1
(DN243422) ACAE-aaa35m16.g1 Hydra EST UCI 5 Hydra magnipapil... 48 0.69 1
(CX833971) ACAC-aaa64a09.g1 Hydra EST UCI 7 Hydra magnipapil... 48 0.69 1
(CT722861) Danio rerio EST, clone ZF_mu_212d17 5'. 48 0.69 1
(CN775351) tae72c12.y1 Hydra EST Darmstadt I Hydra magnipapi... 48 0.69 1
(CN770631) tae72c12.x1 Hydra EST Darmstadt I Hydra magnipapi... 48 0.69 1
(CN558866) tad77a09.y1 Hydra EST Darmstadt I Hydra magnipapi... 48 0.69 1
(CN554158) tae33g07.y1 Hydra EST Darmstadt I Hydra magnipapi... 48 0.69 1
(CN551711) tad77a09.x2 Hydra EST Darmstadt I Hydra magnipapi... 48 0.69 1
(CB890267) taa52e08.x1 Hydra EST -III Hydra magnipapillata c... 48 0.69 1
(ES840265) UFL_063_21 Cotton fiber 0-10 day post anthesis Go... 48 0.69 1
(AL590302) Human DNA sequence from clone RP11-252P19 on chro... 42 0.83 3
(AM486603) Vitis vinifera contig VV78X089438.3, whole genome... 36 1.0 4
(AC106783) Homo sapiens chromosome 16 clone RP11-347K10, com... 42 1.2 4
(AC087658) Homo sapiens chromosome 11 clone RP5-874H1 map 11... 38 1.5 4
(CU638698) Zebrafish DNA sequence from clone CH1073-202I11 i... 32 1.5 2
(EG329693) PMAO-aae07a05.g1 Lamprey_EST_Embryo Petromyzon ma... 38 1.6 2
(AI389106) GH20192.5prime GH Drosophila melanogaster head pO... 36 1.8 2
(AL606837) Brugia malayi genomic DNA MIF-1 locus. 40 1.9 4
(AC018642) Homo sapiens chromosome 7 clone RP11-329I5, compl... 42 2.3 3
(AC170187) Mus musculus BAC clone RP23-320B10 from chromosom... 46 2.7 1
(AC144949) Mus musculus BAC clone RP23-136C19 from chromosom... 46 2.7 1
(AC204095) Macaca mulatta BAC CH250-488O11 () complete sequ... 46 2.7 1
(AP010441) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 2.7 1
(AC235419) Glycine max strain Williams 82 clone GM_WBb0136G0... 46 2.7 1
(AC216770) Populus trichocarpa clone POP051-A24, complete se... 46 2.7 1
(AC186957) Canis Familiaris chromosome 12, clone XX-195L16, ... 46 2.7 1
(AC133325) Rattus norvegicus clone CH230-79L17, *** SEQUENCI... 46 2.7 1
(AC133305) Rattus norvegicus clone CH230-90I20, *** SEQUENCI... 46 2.7 1
(AP008121) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 2.7 1
(AP007754) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 2.7 1
(AC204234) Macaca mulatta clone CH250-510G17, WORKING DRAFT ... 46 2.7 1
(AC168480) Strongylocentrotus purpuratus clone R3-3117N3, WO... 46 2.7 1
(ER579208) 1093015827650 Global-Ocean-Sampling_GS-36-01-01-2... 46 2.7 1
(EK241559) 1095460227519 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.7 1
(ED648808) GM_WBa0065K05.r GM_WBa Glycine max genomic clone ... 46 2.7 1
(DH634867) Rattus norvegicus DNA, BAC clone: RNB1-172F02, 3'... 46 2.7 1
(EB014821) LedoSEQ5424 Lentinula edodes pBluescript (EcoRI-X... 46 2.7 1
(DW166548) CLVY5024.b1_O07.ab1 CLV(XYZ) lettuce virosa Lactu... 46 2.7 1
(BW600244) Lotus japonicus cDNA, clone: LjCa-021-CC01, 5' en... 46 2.7 1
(BJ439065) Dictyostelium discoideum cDNA clone:ddv39g11, 3' ... 46 2.7 1
(GE701516) CBUI1305.g1 B.anynana_wing.0-3d_nosize Bicyclus a... 46 2.7 1
(GE701514) CBUI1305.b1 B.anynana_wing.0-3d_nosize Bicyclus a... 46 2.7 1
(GE688112) CBUN5246.g1 B.anynana_wing.0-3d_2-10kb Bicyclus a... 46 2.7 1
(GE688110) CBUN9021.g1 B.anynana_wing.0-3d_2-10kb Bicyclus a... 46 2.7 1
(GE664651) CBUC6098.g1 B.anynana_abdomen_nosize Bicyclus any... 46 2.7 1
(FD467318) HA_MX2_19h11_SP6 Lobster Multiple Tissues, Normal... 46 2.7 1
(AA050399) mj21b11.r1 Soares mouse embryo NbME13.5 14.5 Mus ... 46 2.7 1
(AC145091) Pan troglodytes BAC clone RP43-12F8 from chromoso... 38 2.9 6
(EI853556) CAH1-20B16TR CAA1Ba Cicer arietinum genomic clone... 32 3.1 3
(CQ600014) Sequence 27772 from Patent WO0171042. 36 3.6 3
(AC215460) Solanum lycopersicum chromosome 2 clone C02SLe009... 42 3.7 3
(AA484400) nf10e04.s1 NCI_CGAP_Li1 Homo sapiens cDNA clone I... 32 3.8 3
(AC215417) Solanum lycopersicum chromosome 2 clone C02HBa019... 42 4.5 3
(FH721544) CHO_OF5065xb07r1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 4.7 2
(AC133583) Mus musculus chromosome 12, clone RP24-444A9, com... 42 4.9 4
(AC198733) Zea mays chromosome 7 clone CH201-327O17; ZMMBBc0... 42 4.9 2
(AC235741) Glycine max strain Williams 82 clone GM_WBb0105H0... 40 5.0 4
(AY686596) Apis mellifera Dscam gene, complete cds, alternat... 34 5.3 2
(GC702177) Sequence 17422 from patent US 6812339. 42 5.4 2
(AC068290) Homo sapiens chromosome 1 clone RP11-625P11, WORK... 42 5.6 2
(AC102038) Mus musculus chromosome 19, clone RP23-248G20, co... 40 5.7 3
(GQ340943) Solen grandis clone Sg10 microsatellite sequence. 34 5.7 2
(AC119540) Rattus norvegicus NOVECTOR CH230-490H7 (Children... 42 5.8 2
(CV495983) 73651.1 Cold Sweetening B Solanum tuberosum cDNA ... 40 5.9 2
(AC020448) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 36 6.2 2
(BT029919) Drosophila melanogaster GH20192 full insert cDNA. 36 6.4 2
(AC136386) Rattus norvegicus clone CH230-472F3, WORKING DRAF... 42 6.5 3
(AM474177) Vitis vinifera contig VV78X128766.2, whole genome... 34 6.7 2
(AC170987) Medicago truncatula chromosome 7 clone mth2-47i4,... 36 6.8 4
(AU034153) Dictyostelium discoideum slug cDNA, clone SLC108. 36 6.9 2
(GM887577) Sequence 44 from Patent WO2008137089. 38 6.9 6
(FK185188) XABT201655.g1 Gateway compatible cien cDNA librar... 32 7.0 2
(AC187616) Pan troglodytes BAC clone CH251-587H13 from chrom... 42 7.2 2
(FE784270) CCAG13719.b3 CCAG Petrolisthes cinctipes heart, g... 34 7.7 2
(DX302907) OR_ABa0212F06.f OR_ABa Oryza ridleyi genomic clon... 42 8.0 2
(AC006350) Homo sapiens PAC clone RP5-998H4 from 7, complete... 40 8.4 3
(FH582021) CHO_OF4670xi14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.0 2
(DW643667) CLJ376-M11.y1d-s SHGC-CLJ2 Gasterosteus aculeatus... 36 9.0 2
(BJ421801) Dictyostelium discoideum cDNA clone:ddv43j23, 5' ... 32 9.3 3
(AC231313) Choloepus hoffmanni clone CH281-422F22, WORKING D... 36 9.4 3
>(BJ367636) Dictyostelium discoideum cDNA clone:ddc43n10, 5' end,
single read.
Length = 636
Score = 825 bits (416), Expect(2) = 0.0
Identities = 416/416 (100%)
Strand = Plus / Plus
Query: 486 cagctataggtagtgaatcattaaatggaagtggatcagcatttagcgcaggtaatttgg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagctataggtagtgaatcattaaatggaagtggatcagcatttagcgcaggtaatttgg 250
Query: 546 atacaactaaaagaaatagttcacaacttgatatactttcaaatcatagacaatcactag 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atacaactaaaagaaatagttcacaacttgatatactttcaaatcatagacaatcactag 310
Query: 606 aggctacagaccaaattgttggagaagatgatggctcaataaataccactactaccacca 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggctacagaccaaattgttggagaagatgatggctcaataaataccactactaccacca 370
Query: 666 caactacagctttaccaacaaatgaaaatgaaccagccaactcttctccaccttttgaac 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caactacagctttaccaacaaatgaaaatgaaccagccaactcttctccaccttttgaac 430
Query: 726 caattttatcacaccaagactctttatcaaatttaaatttaaatgtaaaaaatgaatcaa 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caattttatcacaccaagactctttatcaaatttaaatttaaatgtaaaaaatgaatcaa 490
Query: 786 caacaaccaccaccaataattcaaccaataacactaatgatgcaccacaatcaccactaa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caacaaccaccaccaataattcaaccaataacactaatgatgcaccacaatcaccactaa 550
Query: 846 aagcatcacaaactattaacccatcaccaccttcacctgtacaacgtaaaaatgga 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagcatcacaaactattaacccatcaccaccttcacctgtacaacgtaaaaatgga 606
Score = 174 bits (88), Expect(2) = 0.0
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 349 atttttaaaatcttcaccttcaccaataccatcaccatctaataaaatgttaggttcaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 atttttaaaatcttcaccttcaccaataccatcaccatctaataaaatgttaggttcaag 113
Query: 409 aattgaaagaaaagatagtttcgaatca 436
||||||||||||||||||||||||||||
Sbjct: 114 aattgaaagaaaagatagtttcgaatca 141
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,065,638,085
Number of extensions: 67644374
Number of successful extensions: 5805244
Number of sequences better than 10.0: 116
Length of query: 996
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 972
Effective length of database: 104,103,628,548
Effective search space: 101188726948656
Effective search space used: 101188726948656
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home