Dictyostelium discoideum cDNA Contig-U13001-1

Assembled

Chromosomal Location of Contig-U13001-1

Sequence Contig-U13001-1

AAAAGATTTA AAATGGCAAC TGATAGTCCA ATTCTTTGGA AAAATCTTTA
TAAAAGTAAT CCATTATTTC ATAAAAAGAC ACCAAAAAGA AAACAAATCA
TTCACTCAAA TCTAAGTAAT GATGAAAATA AAGTAAATTC AAATTCTGGT
GATTCTGCTG ATGGTTCATC AAGCCAAGAA GAAGAAGAAC AACAACAACA
AAATCAACAA CAAAATCAAC AACAAAATCA ACAACAACAA CAACAACAAA
CATTTGACCT TTCAAATATT AATTTAAATG ATCCAATATC ATTATTAATG
GTATTTACAA ATGGAATAAT TCCTCAAAAT TTATCACCAA CTGAAATAAT
AAATGTTGGT GGAATAGTGT CTCAAATTGA TTTGAATGAT CTTTCAAACG
TTGAAACTCT TATTCAACAA TTACCTCATC AAGTTTTATC ATTGATTCAA
ATGAATACAC TTGATGCAAA GATTCAACAT TTATCAATGA TTAGTGGAAT
GCCAGCAACC ATTGGTCAAG AATCACCAAT CAATAAAAAC TCTTCAGATA
ATCCAAAACC AAATGCATAC AATAAAAGAG ATAACAACTC TTATATTCCT
GATGAAGAGT TTATTAATTG GAAATCACAT TACACTGAAA AACATAAACA
ATCAAAGAGA TGGGTTAATA TGGAACCAAT TCGTATCACC CCTCTAAAGG
GTCACAATAG GGCAATCAAA GCTGTAAAGA GTGAGGGTAA TTCAGCTATC
ACCGTATCAA CAGAGAAAAA AATCAAATTT TGGAATTTAA ACACTGGTCA
ATGTATTGGA GACTACGAAG GTGAATCAGG TGTTCTCTCT GTAGAGTATG
ATCACACTCA AAAGTCATCT TGTATTTGGC CATTGTCAGA TTATACCAAA
GTCCACATTG GCCATAAGAA TGGTACCGTC ACTATGGTTG ATTTCATTGA
ACAACCAATT GAAGTTATTC ATACATCAAG ACCAACCAAT TTGGCTGATG
GTTTCGATTT CACCTTTCCT GGTAAATATT TGATTTGGGA ACACACAATC
ATTCACTATT GGGATGTTGA AACAAGTACA CTCTTGTGGA ATGAACTAAA
TGCTCACACA AAGAAAATCA CTCAATCAAA GATTGTCGCA CAACATGAAC
TTTCTAATAA AGGTATCGTA TTCACAACTA GCTCTGATAA ATCTGCAAAA
GTTTGGGATT TAACAAATGG TACTTGTATA AATACTTTGG TTGGCCATTC
ATATGCCGTC AATTGTATTG AACCAATTGG TGACTATATG GCTTTGACAG
GTTCCACTGA TAAAACTCTT AAACTTTGGG ATCTTAGACA AGCCTCAACA
TTTATATCTA GTTACTCTAC TAAACACACT GGTCCAATTA GATGTATTTC
CTATCAAGAA AAGAATGGTA TTGTTTTAAG TGGTAGTGAT GATGGTTCAA
TCATTGCATT TAACTTGGAT AATTGGAATC TTTCAAATAT CTCTGTTGTT
AAAAAACCAA TCTTTAATAA TGTTATTGGT AATATTGGTA CAACAACAAC
AACAACTACT ACTACCACTA CAACTACAAC TACTACTACT TCAACTACAA
ATAATACTAA TGTACCAGAG ATTCCAAAGA TTAATTTAGT AATTTAGGTA
CTTTTAAGGA TTCCAAAAGA CTTCATAATC ATGAATCTGC TGTAAGCTTG
CATTGAATCT GATGAAGCTG GTTTTATTAG TGGATCACAA AATGGATTGG
TTTTGAGATG GGACTTTTAA GTTAGGTTTC CAATTTTATT ACAATCATCA
AAATAAATTA AACAACAAAA AAAAAAATAA AAAAATAAAA ATAATTTATT
TATGTAT

Translated Amino Acid Sequence Contig-U13001-1

KRFKMATDSPILWKNLYKSNPLFHKKTPKRKQIIHSNLSNDENKVNSNSGDSADGSSSQE
EEEQQQQNQQQNQQQNQQQQQQQTFDLSNINLNDPISLLMVFTNGIIPQNLSPTEIINVG
GIVSQIDLNDLSNVETLIQQLPHQVLSLIQMNTLDAKIQHLSMISGMPATIGQESPINKN
SSDNPKPNAYNKRDNNSYIPDEEFINWKSHYTEKHKQSKRWVNMEPIRITPLKGHNRAIK
AVKSEGNSAITVSTEKKIKFWNLNTGQCIGDYEGESGVLSVEYDHTQKSSCIWPLSDYTK
VHIGHKNGTVTMVDFIEQPIEVIHTSRPTNLADGFDFTFPGKYLIWEHTIIHYWDVETST
LLWNELNAHTKKITQSKIVAQHELSNKGIVFTTSSDKSAKVWDLTNGTCINTLVGHSYAV
NCIEPIGDYMALTGSTDKTLKLWDLRQASTFISSYSTKHTGPIRCISYQEKNGIVLSGSD
DGSIIAFNLDNWNLSNISVVKKPIFNNVIGNIGTTTTTTTTTTTTTTTTTSTTNNTNVPE
IPKINLVI*vllripkdfiimnll*aciesdeagfisgsqnglvlrwdf*vrfpillqss
k*ikqqkkk*knknnlfmy

Homology Contig-U13001-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti...  2510  0.0
Contig-U14269-1 (Contig-U14269-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U11203-1 (Contig-U11203-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U14745-1 (Contig-U14745-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U13591-1 (Contig-U13591-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U13130-1 (Contig-U13130-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U11965-1 (Contig-U11965-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U14836-1 (Contig-U14836-1Q) /CSM_Contig/Conti...    34  0.52

Homology Contig-U13001-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AF151733) Dictyostelium discoideum F-Box A protein (fbxA) g...  1518   0.0    2
(AF151111) Dictyostelium discoideum cheater ChtA (chtA) gene...  1518   0.0    2
(C89974) Dictyostelium discoideum slug cDNA, clone SSG717.        773   0.0    5
(AU061060) Dictyostelium discoideum slug cDNA, clone SLC785.     1033   0.0    1
(BJ358450) Dictyostelium discoideum cDNA clone:ddc1j16, 5' e...   662   0.0    2
(BJ391350) Dictyostelium discoideum cDNA clone:dds13m08, 5' ...   581   0.0    2
(BJ387701) Dictyostelium discoideum cDNA clone:dds4f11, 5' e...   884   0.0    2
(BJ399131) Dictyostelium discoideum cDNA clone:dds4f11, 3' e...   615   0.0    4
(AU034381) Dictyostelium discoideum slug cDNA, clone SLC785.      285   e-172  4
(BJ400469) Dictyostelium discoideum cDNA clone:dds13m08, 3' ...   317   e-151  4

Homology Contig-U13001-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q9Y0T2) RecName: Full=F-box/WD repeat-containing protein A;    ...  1003   0.0
AF151112_1(AF151112|pid:none) Dictyostelium discoideum cheater C...    97   2e-18
AX722159_1(AX722159|pid:none) Sequence 17 from Patent WO03024999...    94   1e-17
(Q969H0) RecName: Full=F-box/WD repeat-containing protein 7; Alt...    94   1e-17
AK223449_1(AK223449|pid:none) Homo sapiens mRNA for F-box protei...    94   1e-17
AF383178_1(AF383178|pid:none) Homo sapiens F-box protein FBX30 m...    94   1e-17
CR859650_1(CR859650|pid:none) Pongo abelii mRNA; cDNA DKFZp459C1...    94   2e-17
CR860672_1(CR860672|pid:none) Pongo abelii mRNA; cDNA DKFZp459M2...    94   2e-17
AL953881_1(AL953881|pid:none) Zebrafish DNA sequence from clone ...    93   4e-17
BC037320_1(BC037320|pid:none) Homo sapiens F-box and WD-40 domai...    92   5e-17