Dictyostelium discoideum cDNA Contig-U12962-1

Assembled

Chromosomal Location of Contig-U12962-1

Sequence Contig-U12962-1

AAATAAATTT ATAAATATTA ATAAATTAGT TAGTTACAAA ATTATGATAA
ACAATAAAAA TAATANTAAT AATAATAAAA ATTTAATTGA AAATCCTATA
ATTGAAGATA ACGAAGATGA AAATACAATT TTAACAAAAT CAGCAAAGAA
AGAACAGTCA TTAAATTTTA TATTGAATAG TTTATTTTAC AAGAATTCAA
CAAGGTATAA GAATAATAGA AATAATAGAA TTAAAAACAG TAATGAGGAT
GATAAAGATT ACTCATTTCA ACCAATAAAG AGTTTAATAG AGTTACCAGA
TGATATACTA TTAATGATAT TCAGATATCT AGATGTACCA ACATTATTAA
AAGTATCACA ACTTTGTAAT TTCCTAAATA GCGTTTCATC AAATCATGAA
CTTTGGAAAG AGTTATTCTT TAGAAAATGG GGACCACTCT TCCCACTCGT
ACCAGGTTTG TACCATCAGT TGTTGTCATC AATATTTCTC AAATCCATAC
CTCTTATTTA GAACCCATAA ATCAACTATT CTCANNNNNN NNN

Translated Amino Acid Sequence Contig-U12962-1

NKFININKLVSYKIMINNKNNXNNNKNLIENPIIEDNEDENTILTKSAKKEQSLNFILNS
LFYKNSTRYKNNRNNRIKNSNEDDKDYSFQPIKSLIELPDDILLMIFRYLDVPTLLKVSQ
LCNFLNSVSSNHELWKELFFRKWGPLFPLVPGLYHQLLSSIFLKSIPLI*np*inysxxx

Homology Contig-U12962-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12962-1 (Contig-U12962-1Q) /CSM_Contig/Conti...   872  0.0
Contig-U06805-1 (Contig-U06805-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13445-1 (Contig-U13445-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U08848-1 (Contig-U08848-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U13603-1 (Contig-U13603-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U13586-1 (Contig-U13586-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...    34  0.15

Homology Contig-U12962-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ364581) Dictyostelium discoideum cDNA clone:ddc32a07, 5' ...   856   0.0    1
(GR569982) CBTF844.b1 CBTF Dictyostelium purpureum 12 hr veg...    64   3e-20  4
(GR568092) CBTF3622.b1 CBTF Dictyostelium purpureum 12 hr ve...    64   3e-20  4
(GR568723) CBTF4073.b1 CBTF Dictyostelium purpureum 12 hr ve...    64   3e-20  4
(EA385309) Sequence 34133 from patent US 7314974.                  50   0.093  1
(CP001034) Natranaerobius thermophilus JW/NM-WN-LF, complete...    50   0.093  1
(CP000383) Cytophaga hutchinsonii ATCC 33406, complete genome.     50   0.093  1
(CT571262) Medicago truncatula chromosome 5 clone mth2-35p15...    48   0.37   1
(AC146712) Medicago truncatula clone mth2-117f19, WORKING DR...    48   0.37   1
(AC140772) Medicago truncatula clone mth2-7g19, WORKING DRAF...    48   0.37   1

Homology Contig-U12962-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


FN392320_208(FN392320|pid:none) Pichia pastoris GS115 chromosome...    46   7e-04
AY947341_1(AY947341|pid:none) Gallus gallus S-phase kinase-assoc...    46   7e-04
AJ719485_1(AJ719485|pid:none) Gallus gallus mRNA for hypothetica...    46   7e-04
AK059732_1(AK059732|pid:none) Oryza sativa Japonica Group cDNA c...    45   0.001
AK175424_1(AK175424|pid:none) Arabidopsis thaliana mRNA, partial...    45   0.002
BT068576_1(BT068576|pid:none) Zea mays full-length cDNA clone ZM...    45   0.002
BT038369_1(BT038369|pid:none) Zea mays full-length cDNA clone ZM...    45   0.002
AC122169_26(AC122169|pid:none) Medicago truncatula clone mth2-9m...    44   0.002
U64849_1(U64849|pid:none) Caenorhabditis elegans cosmid K04A8, c...    44   0.004
AM270030_28(AM270030|pid:none) Aspergillus niger contig An02c036...    43   0.005