Homology Contig-U12962-1 vs DNA
Query= Contig-U12962-1 (Contig-U12962-1Q) /CSM_Contig/Contig-U12962-1Q.Seq.d
(543 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ364581) Dictyostelium discoideum cDNA clone:ddc32a07, 5' ... 856 0.0 1
(GR569982) CBTF844.b1 CBTF Dictyostelium purpureum 12 hr veg... 64 3e-20 4
(GR568092) CBTF3622.b1 CBTF Dictyostelium purpureum 12 hr ve... 64 3e-20 4
(GR568723) CBTF4073.b1 CBTF Dictyostelium purpureum 12 hr ve... 64 3e-20 4
(EA385309) Sequence 34133 from patent US 7314974. 50 0.093 1
(CP001034) Natranaerobius thermophilus JW/NM-WN-LF, complete... 50 0.093 1
(CP000383) Cytophaga hutchinsonii ATCC 33406, complete genome. 50 0.093 1
(CT571262) Medicago truncatula chromosome 5 clone mth2-35p15... 48 0.37 1
(AC146712) Medicago truncatula clone mth2-117f19, WORKING DR... 48 0.37 1
(AC140772) Medicago truncatula clone mth2-7g19, WORKING DRAF... 48 0.37 1
(CU469565) Medicago truncatula chromosome 5 clone mte1-9k20,... 48 0.37 1
(CR345976) mte1-8M21FM1 BAC end, cultivar Jemalong A17 of Me... 48 0.37 1
(CG943607) MBEGE81TR mth2 Medicago truncatula genomic clone ... 48 0.37 1
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg... 34 0.70 2
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg... 34 0.70 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.77 9
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 38 0.77 9
(AL670708) Mouse DNA sequence from clone RP23-125A21 on chro... 32 0.77 2
(CR974478) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 38 1.1 6
(BT027788) Gasterosteus aculeatus clone CNB21-E05 mRNA seque... 46 1.5 1
(AM464968) Vitis vinifera contig VV78X161000.7, whole genome... 46 1.5 1
(FN357318) Schistosoma mansoni genome sequence supercontig S... 46 1.5 1
(AK341983) Acyrthosiphon pisum ACYPI010111 mRNA, clone: 203A... 46 1.5 1
(AC151423) Medicago truncatula chromosome 7 clone mth2-13k5,... 46 1.5 1
(AC126713) Rattus norvegicus clone CH230-5L14, WORKING DRAFT... 46 1.5 1
(AC103207) Rattus norvegicus clone CH230-33J14, WORKING DRAF... 46 1.5 1
(AZ532555) ENTBO83TF Entamoeba histolytica Sheared DNA Entam... 46 1.5 1
(DU946425) 375592 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.5 1
(CW988484) KBrH015I08R KBrH, Brassica rapa HindIII BAC libra... 46 1.5 1
(DY977083) CLSS10841.b1_A23.ab1 CLS(LMS) lettuce sativa Lact... 46 1.5 1
(DY228356) ID0AAK3YN23CM1 ApHL3SD Acyrthosiphon pisum cDNA c... 46 1.5 1
(DW111110) CLRX7999.b1_N08.ab1 CLR(XYZ) lettuce serriola Lac... 46 1.5 1
(DW105159) CLRX2975.b1_M24.ab1 CLR(XYZ) lettuce serriola Lac... 46 1.5 1
(DV742428) ID0AFF7AD02CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 46 1.5 1
(DV742130) ID0AFF6BA05CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 46 1.5 1
(CN582188) USDA-FP_125250 Acyrthosiphon pisum, Pea Aphid Acy... 46 1.5 1
(BU002895) QGG33H01.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 46 1.5 1
(BQ996529) QGG13B11.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 46 1.5 1
(FF317450) 280389990 Pea aphid whole body normalized full le... 46 1.5 1
(FF297865) 279317946 Pea aphid whole body normalized full le... 46 1.5 1
(EX645521) 256672404 Pea aphid whole body normalized full le... 46 1.5 1
(FM162591) Photorhabdus asymbiotica ATCC43949 complete genome. 46 1.5 1
(AC142356) Rattus norvegicus clone CH230-494N12, WORKING DRA... 38 1.8 4
(ER519736) 1093015555873 Global-Ocean-Sampling_GS-35-01-01-1... 38 2.5 2
(EB806160) 3483_D04 Botrytis cinerea expressed sequence tags... 40 2.6 2
(CR388095) Zebrafish DNA sequence from clone CH211-199M9 in ... 32 2.8 2
(AC180772) Strongylocentrotus purpuratus clone R3-3073N24, W... 34 2.9 2
(CU179749) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 3.0 2
(CU633857) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 3.0 2
(CU633359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.0 4
(AC158388) Mus musculus BAC clone RP24-545I9 from chromosome... 38 3.2 5
(CU855517) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.6 5
(FH322921) CHO_OF4261xc18f2.ab1 CHO_OF4 Nicotiana tabacum ge... 34 3.9 2
(FH317366) CHO_OF4260xc18f2.ab1 CHO_OF4 Nicotiana tabacum ge... 34 3.9 2
(AL139410) Human DNA sequence from clone RP11-21N7 on chromo... 40 3.9 4
(AC178482) Strongylocentrotus purpuratus clone R3-3033I17, W... 34 4.4 6
(AL591586) Mouse DNA sequence from clone RP23-126L18 on chro... 38 5.2 4
(GC701957) Sequence 17202 from patent US 6812339. 40 5.4 4
(BV826355) pRRL2:Newb:20080411:201041 USMARC Pig Breed SNP D... 44 5.7 1
(BV147251) PZA02687-79940-NC7A Zea mays NC7A Zea mays STS ge... 44 5.7 1
(BV147247) PZA02687-79926-GT119 Zea mays GT119 Zea mays STS ... 44 5.7 1
(BV147246) PZA02687-79927-CO159 Zea mays CO159 Zea mays STS ... 44 5.7 1
(AL928715) Mouse DNA sequence from clone RP23-373D16 on chro... 44 5.7 1
(AC168072) Mus musculus BAC clone CH25-291I13 from chromosom... 44 5.7 1
(AC154339) Mus musculus BAC clone RP23-248O15 from chromosom... 44 5.7 1
(EU960394) Zea mays clone 224467 rac GTPase activating prote... 44 5.7 1
(EF545376) Ascidiota blepharophylla subsp. alaskana voucher ... 44 5.7 1
(EF545375) Ascidiota blepharophylla subsp. alaskana voucher ... 44 5.7 1
(CT010515) M.truncatula DNA sequence from clone MTH2-146B21 ... 44 5.7 1
(AM448101) Vitis vinifera contig VV78X171513.6, whole genome... 44 5.7 1
(AC189621) Brassica rapa subsp. pekinensis clone KBrH121P05,... 44 5.7 1
(GC701874) Sequence 17119 from patent US 6812339. 44 5.7 1
(GC699344) Sequence 14589 from patent US 6812339. 44 5.7 1
(GC699343) Sequence 14588 from patent US 6812339. 44 5.7 1
(GC696624) Sequence 11868 from patent US 6812339. 44 5.7 1
(CU607023) Pig DNA sequence from clone CH242-383N15 on chrom... 44 5.7 1
(AY918878) Cyphophthalmus sp. 1 Bulgaria cytochrome oxidase ... 44 5.7 1
(Z83848) Human DNA sequence from clone RP1-57A13 on chromoso... 44 5.7 1
(AC162959) Bos taurus clone CH240-126H17, WORKING DRAFT SEQU... 44 5.7 1
(AC157356) Bos taurus clone CH240-53J21, WORKING DRAFT SEQUE... 44 5.7 1
(AC137508) Medicago truncatula clone mth2-17m13, WORKING DRA... 44 5.7 1
(FP102376) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(CU862076) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(CU466474) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(AC171023) Bos taurus clone CH240-257J7, WORKING DRAFT SEQUE... 44 5.7 1
(AZ291295) RPCI-23-145E12.TV RPCI-23 Mus musculus genomic cl... 44 5.7 1
(AZ034563) RPCI-23-248O15.TJ RPCI-23 Mus musculus genomic cl... 44 5.7 1
(FI125716) MUGQ_CH252P502K12T7_CH0217_038 CHORI-252 Vervet M... 44 5.7 1
(ER351311) 1092347001522 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 1
(EK180292) 1095458118246 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(AM656608) Entamoeba moshkovskii FIC GSS, clone mosh043c06.p1k. 44 5.7 1
(EJ215570) 1092351091034 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(ED668354) GM_WBa0098D22.r GM_WBa Glycine max genomic clone ... 44 5.7 1
(ED188758) AUAC-aag50d11.g1 Ascaris suum whole genome shotgu... 44 5.7 1
(CG985050) CH240_154B08.TV CHORI-240 Bos taurus genomic clon... 44 5.7 1
(CE315971) tigr-gss-dog-17000361069615 Dog Library Canis lup... 44 5.7 1
(CE198580) tigr-gss-dog-17000372204484 Dog Library Canis lup... 44 5.7 1
(AG320380) Mus musculus molossinus DNA, clone:MSMg01-106D19.... 44 5.7 1
(EG349201) SAAH-aad03c12.b1 Agen 0058 Schmidtea mediterranea... 44 5.7 1
(EE272211) PMAO-aac91h02.g1 Lamprey_EST_Embryo Petromyzon ma... 44 5.7 1
(DV603508) EST1206504 Glossina morsitans morsitans Fat body ... 44 5.7 1
(AU266528) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.7 1
(CT863616) Oryza sativa Indica Group EST sequence:OSIGCSN025... 44 5.7 1
(CK769727) 957814 MARC 1BOV Bos taurus cDNA 3', mRNA sequence. 44 5.7 1
(CA827577) 1114016F01.y3 1114 - Unigene IV from Maize Genome... 44 5.7 1
(CA827568) 1114016E03.y3 1114 - Unigene IV from Maize Genome... 44 5.7 1
(CA827528) 1114016A03.y3 1114 - Unigene IV from Maize Genome... 44 5.7 1
(BW268282) Ciona intestinalis cDNA, clone:cign004g20, 5' end... 44 5.7 1
(BW258887) Ciona intestinalis cDNA, clone:cign001a06, 5' end... 44 5.7 1
(BW138438) Ciona intestinalis cDNA, clone:rcign004g20, 3' en... 44 5.7 1
(BW129018) Ciona intestinalis cDNA, clone:rcign001a06, 3' en... 44 5.7 1
(BU750549) CH3#034_B05T3 Canine heart normalized cDNA Librar... 44 5.7 1
(BQ235772) hd85g04.g1 Canis Total Brain cDNAs Canis lupus fa... 44 5.7 1
(BQ048007) 1091001D06.y1 1091 - Immature ear with common EST... 44 5.7 1
(BQ048004) 1091001B02.y1 1091 - Immature ear with common EST... 44 5.7 1
(BQ047987) 1091001C11.y1 1091 - Immature ear with common EST... 44 5.7 1
(BQ047977) 1091001B07.y1 1091 - Immature ear with common EST... 44 5.7 1
(BM089460) 503213 MARC 2BOV Bos taurus cDNA 5', mRNA sequence. 44 5.7 1
(BM089459) 503212 MARC 2BOV Bos taurus cDNA 5', mRNA sequence. 44 5.7 1
(CP000961) Shewanella woodyi ATCC 51908, complete genome. 44 5.7 1
(CP000720) Yersinia pseudotuberculosis IP 31758, complete ge... 44 5.7 1
(AB469012) Candidatus Phytoplasma oryzae Rnc, DnaD, IMP, Pyr... 44 5.7 1
(AC150937) Bos taurus clone CH240-38N15, WORKING DRAFT SEQUE... 40 7.2 2
(AC150934) Bos taurus clone CH240-38L15, WORKING DRAFT SEQUE... 40 7.3 2
(AC150846) Medicago truncatula chromosome 6 clone mth2-166b1... 38 7.4 4
(AC160302) Bos taurus clone CH240-81M20, WORKING DRAFT SEQUE... 40 7.8 2
(BX323463) Zebrafish DNA sequence from clone DKEY-169J7 in l... 38 8.3 4
(AC189313) Brassica rapa subsp. pekinensis clone KBrB034N10,... 42 8.8 3
(AC132227) Mus musculus BAC clone RP24-573O22 from chromosom... 42 9.1 4
(EJ440189) 1093015301039 Global-Ocean-Sampling_GS-28-01-01-1... 36 9.2 2
(AC143166) Macaca mulatta clone CH250-269E3, WORKING DRAFT S... 38 9.5 5
(AC225522) Medicago truncatula clone mth2-144e17, WORKING DR... 34 9.6 6
(AC210516) Populus trichocarpa clone POP119-J20, complete se... 40 9.9 4
>(BJ364581) Dictyostelium discoideum cDNA clone:ddc32a07, 5' end,
single read.
Length = 534
Score = 856 bits (432), Expect = 0.0
Identities = 432/432 (100%)
Strand = Plus / Plus
Query: 103 tgaagataacgaagatgaaaatacaattttaacaaaatcagcaaagaaagaacagtcatt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tgaagataacgaagatgaaaatacaattttaacaaaatcagcaaagaaagaacagtcatt 162
Query: 163 aaattttatattgaatagtttattttacaagaattcaacaaggtataagaataatagaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aaattttatattgaatagtttattttacaagaattcaacaaggtataagaataatagaaa 222
Query: 223 taatagaattaaaaacagtaatgaggatgataaagattactcatttcaaccaataaagag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 taatagaattaaaaacagtaatgaggatgataaagattactcatttcaaccaataaagag 282
Query: 283 tttaatagagttaccagatgatatactattaatgatattcagatatctagatgtaccaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttaatagagttaccagatgatatactattaatgatattcagatatctagatgtaccaac 342
Query: 343 attattaaaagtatcacaactttgtaatttcctaaatagcgtttcatcaaatcatgaact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attattaaaagtatcacaactttgtaatttcctaaatagcgtttcatcaaatcatgaact 402
Query: 403 ttggaaagagttattctttagaaaatggggaccactcttcccactcgtaccaggtttgta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttggaaagagttattctttagaaaatggggaccactcttcccactcgtaccaggtttgta 462
Query: 463 ccatcagttgttgtcatcaatatttctcaaatccatacctcttatttagaacccataaat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccatcagttgttgtcatcaatatttctcaaatccatacctcttatttagaacccataaat 522
Query: 523 caactattctca 534
||||||||||||
Sbjct: 523 caactattctca 534
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 629,964,516
Number of extensions: 38590429
Number of successful extensions: 3456349
Number of sequences better than 10.0: 133
Length of query: 543
Length of database: 106,710,029,556
Length adjustment: 23
Effective length of query: 520
Effective length of database: 104,212,228,590
Effective search space: 54190358866800
Effective search space used: 54190358866800
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home