Dictyostelium discoideum cDNA Contig-U12960-1

Assembled

Chromosomal Location of Contig-U12960-1

Sequence Contig-U12960-1

TTCAAAGATT CAAAGAAAAA GCCATTGAAT CTGATCGCCG TGTTTCTATG
ATTTTAGATA AATGTTGGTA TTGTCAATCC AATGTAATAA AAGAGATGGT
GATTGCAACT GGAACATCTT GTTATTTACA ACTACCAAGT AGAGGTCAAT
TAGCAAGTGG TCATTGTCAA ATTATACCAA TTGCTCATAC AATTTCTTGT
GTAGAAACTG ATGAAGACAC TTGGGATGAA ATTCAAAACT TTAAGAAATG
TTTAATTCAA ATGTTTGCAA AACAAGATCG TTATCCAATC TTTATTGAAA
CCGCTATGAA ATTTAAACAA CAACGCCACA CCATCATCGA TTGTATTCCT
TTAACCTACG ATAACTTTAC AACTGCTCCA GCTTACTTTA AAAAATCCTT
AATCGAAAGT GAAAGTGAAT GGGCACCTCA TAAACTAATC GATACAATAA
AGAAAGGTGG ACTTAAAAAT TCAATCCCAA AAGGATTTCC TTATCTTTGG
GTTGAATTTG GTTATAAACA AATTGGCTAT CTTCATCCAA TCGATAAGGA
ATCCGAATTT CCACATGACT TTGCTAAAAC GGTTGTAATG GGAATTTTAG
AATTAAATTT AGATGATATT CATAATAAAA GAAGATCAAA ATCTGATGAA
AGTTATTTAA TTAAAAATTT TAAACAAAAT TTTGATCCGT TTGATTGGAC
TAAACAATTA TANATTAAAA AATAAATAAA ATAAAATAAA ATAAAAAAAT
AAAATAGTTT CGAA

Translated Amino Acid Sequence Contig-U12960-1

QRFKEKAIESDRRVSMILDKCWYCQSNVIKEMVIATGTSCYLQLPSRGQLASGHCQIIPI
AHTISCVETDEDTWDEIQNFKKCLIQMFAKQDRYPIFIETAMKFKQQRHTIIDCIPLTYD
NFTTAPAYFKKSLIESESEWAPHKLIDTIKKGGLKNSIPKGFPYLWVEFGYKQIGYLHPI
DKESEFPHDFAKTVVMGILELNLDDIHNKRRSKSDESYLIKNFKQNFDPFDWTKQLXIKK
*ik*nkikk*nsfe

Homology Contig-U12960-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12960-1 (Contig-U12960-1Q) /CSM_Contig/Conti...  1411  0.0
Contig-U10428-1 (Contig-U10428-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U13566-1 (Contig-U13566-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U11145-1 (Contig-U11145-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U03660-1 (Contig-U03660-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U14738-1 (Contig-U14738-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U14322-1 (Contig-U14322-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti...    34  0.21

Homology Contig-U12960-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ383093) Dictyostelium discoideum cDNA clone:ddc46h23, 3' ...  1370   0.0    2
(BJ378254) Dictyostelium discoideum cDNA clone:ddc31f08, 3' ...  1164   0.0    1
(BJ381817) Dictyostelium discoideum cDNA clone:ddc42b23, 3' ...  1104   0.0    3
(GR569167) CBTF4390.g1 CBTF Dictyostelium purpureum 12 hr ve...    68   1e-33  8
(AC189430) Brassica rapa subsp. pekinensis clone KBrB067F22,...    32   4e-04  3
(DX900979) KBrH033I08F KBrH, Brassica rapa HindIII BAC libra...    32   5e-04  3
(DU102891) JBnY033H04F Brassica napus BAC library JBnY Brass...    54   0.008  1
(GP148307) Sequence 17770 from patent US 7482117.                  46   0.042  2
(AM439890) Vitis vinifera contig VV78X149540.12, whole genom...    44   0.11   2
(CT750211) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.13   3

Homology Contig-U12960-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC069159_10(AC069159|pid:none) Arabidopsis thaliana chromosome 1...   192   7e-48
AY056205_1(AY056205|pid:none) Arabidopsis thaliana unknown prote...   192   7e-48
AC096855_23(AC096855|pid:none) Oryza sativa chromosome 3 BAC OJ1...   188   2e-46
AP008209_2577(AP008209|pid:none) Oryza sativa (japonica cultivar...   188   2e-46
BT069926_1(BT069926|pid:none) Zea mays full-length cDNA clone ZM...   182   8e-45
CP000590_3(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 c...   179   9e-44
BC163466_1(BC163466|pid:none) Danio rerio CWF19-like 2, cell cyc...   173   6e-42
(Q3LSS0) RecName: Full=CWF19-like protein 2;  &DQ181569_1(DQ1815...   173   6e-42
CP001329_437(CP001329|pid:none) Micromonas sp. RCC299 chromosome...   170   4e-41
CR858113_1(CR858113|pid:none) Pongo abelii mRNA; cDNA DKFZp469N1...   167   4e-40