Dictyostelium discoideum cDNA Contig-U12890-1

Assembled

Chromosomal Location of Contig-U12890-1

Sequence Contig-U12890-1

TCCACCAGTT TGTAGAACTA GATGTCCAGA AGGTCATGAA TGTAAAGTTG
ATGAATGGGG TAAAGAATGT TGCGTAAAGA TCAAATGTGA TGATATTTGT
GACTTGCGTT GTCCAAAGGG TCATGAATGC AAGATCAAAC ATGATGGTAG
TAAATGCTGT GTCCGTTCAT GGAGACCAAG ACCACATAAA CCACATCCAC
GTCCACCAAT CTGCAGATTA AGATGTCCAC CAGGTCATGA ATGCAAACAT
GATGAACATG GTAAAGAATG TTGCGTTAAA AAACGTCATC ATGATAGATG
TGACCTCAAA TGTAAGAGAG GTTATGAATG TAAAATCAAA CATGATGGCT
CCAAATGTTG TGTCAAGAGA ACTCCAAAGA GACCATGTTG TAAACCAAAT
TCATGTGCCA GAGATGAAAA ATGTGTTGCC ACCAAAGACA GAATCATTTG
TGTAAAACCA ACTTGTGATT ATGATGGCCG TGACGGTGAC TATGATGGTG
ATTATGATGG TGATTATGAT GATGACAATT ATTATGGTGA TGATGACTAT
GATAATGATT GGGACAATGA TAATGATTGG GGTAATGATT GGGATGATGA
TTGGGACAAT GAAGATGGTG ATAATTGGAA TGATGATGAC TTCCAAGATG
CAAATGATGA ATGGGACTAT TAAGCCATTA ATTTTTTAAA AAAAAATAAT
AATAATATTA AT

Translated Amino Acid Sequence Contig-U12890-1

PPVCRTRCPEGHECKVDEWGKECCVKIKCDDICDLRCPKGHECKIKHDGSKCCVRSWRPR
PHKPHPRPPICRLRCPPGHECKHDEHGKECCVKKRHHDRCDLKCKRGYECKIKHDGSKCC
VKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDYDGRDGDYDGDYDGDYDDDNYYGD
DDYDNDWDNDNDWGNDWDDDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnnin

Homology Contig-U12890-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12890-1 (Contig-U12890-1Q) /CSM_Contig/Conti...   952  0.0
Contig-U13200-1 (Contig-U13200-1Q) /CSM_Contig/Conti...    66  6e-11
Contig-U14678-1 (Contig-U14678-1Q) /CSM_Contig/Conti...    58  1e-08
Contig-U09766-1 (Contig-U09766-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U12446-1 (Contig-U12446-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U13006-1 (Contig-U13006-1Q) /CSM_Contig/Conti...    32  0.78
Contig-U12368-1 (Contig-U12368-1Q) /CSM_Contig/Conti...    32  0.78
Contig-U06266-1 (Contig-U06266-1Q) /CSM_Contig/Conti...    32  0.78
Contig-U11858-1 (Contig-U11858-1Q) /CSM_Contig/Conti...    30  3.1

Homology Contig-U12890-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ376221) Dictyostelium discoideum cDNA clone:ddc21m13, 3' ...   920   0.0    3
(M26239) D.discoideum spore coat protein SP60 gene, complete...   920   0.0    3
(X51892) Dictyostelium discoideum SP60 gene for spore coat p...   920   0.0    3
(AU061609) Dictyostelium discoideum slug cDNA, clone SLE802.      920   0.0    1
(BJ377591) Dictyostelium discoideum cDNA clone:ddc24o04, 3' ...   920   0.0    1
(BJ371883) Dictyostelium discoideum cDNA clone:ddc10j06, 3' ...   920   0.0    1
(BJ358437) Dictyostelium discoideum cDNA clone:ddc1e17, 5' e...   920   0.0    1
(AU060152) Dictyostelium discoideum slug cDNA, clone SLA444.      914   0.0    1
(BJ400839) Dictyostelium discoideum cDNA clone:dds15f01, 3' ...   753   0.0    3
(BJ364002) Dictyostelium discoideum cDNA clone:ddc29p10, 5' ...   904   0.0    1

Homology Contig-U12890-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   282   6e-75
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   126   6e-28
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   108   2e-22
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    50   7e-05
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    50   7e-05
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        47   6e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    43   0.008
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    43   0.011
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    40   0.093
AK137752_1(AK137752|pid:none) Mus musculus 6 days neonate skin c...    39   0.16