CSM_Contig cDNA Contig-U12780-1

Homology Contig-U12780-1 vs Protein

Query= Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Contig-U12780-1Q.Seq.d
         (617 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_32(AC116977|pid:none) Dictyostelium discoideum chromoso...   394   e-108
AC150444_8(AC150444|pid:none) Medicago truncatula clone mth2-101...    50   5e-05
CP000813_644(CP000813|pid:none) Bacillus pumilus SAFR-032, compl...    45   0.002
CP000509_2236(CP000509|pid:none) Nocardioides sp. JS614, complet...    40   0.040
AJ235271_228(AJ235271|pid:none) Rickettsia prowazekii strain Mad...    40   0.052
AM426005_1(AM426005|pid:none) Vitis vinifera contig VV78X108753....    39   0.12
CP000393_252(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    38   0.20
CP000472_4302(CP000472|pid:none) Shewanella piezotolerans WP3, c...    37   0.44
CP000393_3129(CP000393|pid:none) Trichodesmium erythraeum IMS101...    36   0.76
CP000393_3130(CP000393|pid:none) Trichodesmium erythraeum IMS101...    35   1.3
CP000728_2020(CP000728|pid:none) Clostridium botulinum F str. La...    35   1.7
AM494475_816(AM494475|pid:none) Orientia tsutsugamushi Boryong c...    35   1.7
FM200053_54(FM200053|pid:none) Salmonella enterica subsp. enteri...    35   1.7
AM494475_871(AM494475|pid:none) Orientia tsutsugamushi Boryong c...    35   1.7
CP001138_57(CP001138|pid:none) Salmonella enterica subsp. enteri...    35   1.7
CP000857_54(CP000857|pid:none) Salmonella enterica subsp. enteri...    35   2.2
AM933172_54(AM933172|pid:none) Salmonella enterica subsp. enteri...    35   2.2
CP001144_52(CP001144|pid:none) Salmonella enterica subsp. enteri...    35   2.2
CP000886_63(CP000886|pid:none) Salmonella enterica subsp. enteri...    35   2.2
AE017220_47(AE017220|pid:none) Salmonella enterica subsp. enteri...    35   2.2
AE014613_54(AE014613|pid:none) Salmonella enterica subsp. enteri...    35   2.2
AE006468_53(AE006468|pid:none) Salmonella enterica subsp. enteri...    35   2.2
AH0508(AH0508) sensor kinase cita (EC 2.7.3.-) [imported] - Salm...    35   2.2
CP001127_57(CP001127|pid:none) Salmonella enterica subsp. enteri...    35   2.2
EU770222_5(EU770222|pid:none) Mycobacterium phage Predator, comp...    34   2.9
AB276001_1(AB276001|pid:none) Plasmodium falciparum msp1 gene fo...    34   3.8
SAZQK1(A25120)major merozoite surface antigen precursor - malari...    34   3.8
AB276017_1(AB276017|pid:none) Plasmodium falciparum msp1 gene fo...    34   3.8
CP000828_2566(CP000828|pid:none) Acaryochloris marina MBIC11017,...    33   4.9
(A1AJ76) RecName: Full=DNA mismatch repair protein mutL;  &(B7MK...    33   4.9
(B7LLV2) RecName: Full=DNA mismatch repair protein mutL;  &CU928...    33   4.9
AE010299_512(AE010299|pid:none) Methanosarcina acetivorans str. ...    33   4.9
CR555306_2352(CR555306|pid:none) Azoarcus sp. EbN1 complete geno...    33   4.9
CU928162_4806(CU928162|pid:none) Escherichia coli ED1a chromosom...    33   4.9
CU928164_4593(CU928164|pid:none) Escherichia coli IAI39 chromoso...    33   4.9
CP000119_302(CP000119|pid:none) Anabaena variabilis ATCC 29413 p...    33   4.9
PDBN(1B63)A MOL_ID: 1;MOL_ID: 1; MOLECULE: MUTL; MOLECULE: MUTL;...    33   4.9
(B5Z2H6) RecName: Full=DNA mismatch repair protein mutL;  &CP001...    33   4.9
CP000970_4448(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    33   4.9
(A8AMN1) RecName: Full=DNA mismatch repair protein mutL;  &CP000...    33   4.9
CP000323_2361(CP000323|pid:none) Psychrobacter cryohalolentis K5...    33   4.9
CU928145_4587(CU928145|pid:none) Escherichia coli 55989 chromoso...    33   4.9
(Q0SXB2) RecName: Full=DNA mismatch repair protein mutL;  &CP000...    33   4.9
(A7ZV39) RecName: Full=DNA mismatch repair protein mutL;  &(A8A7...    33   4.9
AE014075_5145(AE014075|pid:none) Escherichia coli CFT073, comple...    33   4.9
AC116982_3(AC116982|pid:none) Dictyostelium discoideum chromosom...    33   4.9
(Q83P35) RecName: Full=DNA mismatch repair protein mutL;  &AE005...    33   4.9
CP000507_1412(CP000507|pid:none) Shewanella amazonensis SB2B, co...    33   6.4
AP008957_4585(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    33   6.4
CP000089_682(CP000089|pid:none) Dechloromonas aromatica RCB, com...    33   6.4
AE014187_743(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.4
H97556(H97556)response regulator protein (U67070) [imported] - A...    33   6.4
BA000004_3239(BA000004|pid:none) Bacillus halodurans C-125 DNA, ...    33   6.4
AE000794_12(AE000794|pid:none) Borrelia burgdorferi B31 plasmid ...    33   6.4
CR382139_126(CR382139|pid:none) Debaryomyces hansenii strain CBS...    33   6.4
CP000964_4626(CP000964|pid:none) Klebsiella pneumoniae 342, comp...    33   6.4
CU466930_1240(CU466930|pid:none) Candidatus Cloacamonas acidamin...    33   6.4
CP000770_49(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, ...    33   8.4
(B1IT36) RecName: Full=DNA mismatch repair protein mutL;  &CP000...    33   8.4
CP000812_980(CP000812|pid:none) Thermotoga lettingae TMO, comple...    33   8.4
CP000158_335(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,...    33   8.4
BA000021_576(BA000021|pid:none) Wigglesworthia glossinidia endos...    33   8.4
AE009951_1038(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    33   8.4
AC116982_2(AC116982|pid:none) Dictyostelium discoideum chromosom...    33   8.4
AE017345_268(AE017345|pid:none) Cryptococcus neoformans var. neo...    33   8.4
(Q08DT6) RecName: Full=39S ribosomal protein L47, mitochondrial;...    33   8.4

>AC116977_32(AC116977|pid:none) Dictyostelium discoideum chromosome
           2 map 5515173-5817331 strain AX4, complete sequence.
          Length = 2284

 Score =  394 bits (1011), Expect = e-108
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = +2

Query: 17  LKSNNGQLTTSTGSPHQSRLSLGGSTLVTKDIPESILLSRKGEKELIDTPKNFIQLKITC 196
           LKSNNGQLTTSTGSPHQSRLSLGGSTLVTKDIPESILLSRKGEKELIDTPKNFIQLKITC
Sbjct: 52  LKSNNGQLTTSTGSPHQSRLSLGGSTLVTKDIPESILLSRKGEKELIDTPKNFIQLKITC 111

Query: 197 KEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSNRNVLICYFEGERILDNGSEEIL 376
           KEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSNRNVLICYFEGERILDNGSEEIL
Sbjct: 112 KEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSNRNVLICYFEGERILDNGSEEIL 171

Query: 377 VDVTPSKNILLKAGTSEYNFPNAIAEFIDNSIQAVRLNPPGKREIKVTINRPNSDLRTTS 556
           VDVTPSKNILLKAGTSEYNFPNAIAEFIDNSIQAVRLNPPGKREIKVTINRPNSDLRTTS
Sbjct: 172 VDVTPSKNILLKAGTSEYNFPNAIAEFIDNSIQAVRLNPPGKREIKVTINRPNSDLRTTS 231

Query: 557 IRIWDNGCGMNKDALQR 607
           IRIWDNGCGMNKDALQR
Sbjct: 232 IRIWDNGCGMNKDALQR 248

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 951,648,642
Number of extensions: 18795360
Number of successful extensions: 48384
Number of sequences better than 10.0: 66
Number of HSP's gapped: 48356
Number of HSP's successfully gapped: 66
Length of query: 205
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 82
Effective length of database: 653,084,107
Effective search space: 53552896774
Effective search space used: 53552896774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
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