Dictyostelium discoideum cDNA Contig-U12780-1

Assembled

Chromosomal Location of Contig-U12780-1

Sequence Contig-U12780-1

ACTGTTGGCC TACTGGTTAA AATCAAATAA TGGACAACTA ACAACAAGTA
CAGGTTCACC ACATCAAAGT AGATTATCAT TGGGTGGATC TACTTTGGTT
ACAAAAGATA TACCTGAAAG TATTTTATTA TCAAGAAAAG GTGAAAAAGA
ATTAATTGAT ACACCAAAAA ATTTTATTCA ATTAAAAATT ACATGTAAAG
AAATGTTTCA AAATAGTGAT AATCAAGACA TAGATATTTT ATTTTCAGAT
TTATCAAATT TTCCAATTAA AGATGAAATT ACTTATCAAA AATTTCTTAC
TACATCAAAT CGTAATGTTT TAATATGTTA TTTTGAAGGT GAAAGAATTT
TAGATAATGG TAGTGAAGAA ATTTTAGTTG ATGTAACACC TTCAAAAAAT
ATTTTATTAA AAGCTGGTAC TTCAGAATAT AATTTTCCAA ATGCAATTGC
AGAATTTATT GATAATTCAA TTCAAGCAGT AAGATTAAAT CCACCAGGTA
AAAGAGAGAT CAAGGTTACA ATCAATAGAC CAAATTCAGA TTTAAGGACG
ACATCAATTA GAATTTGGGA TAATGGATGT GGTATGAATA AAGATGCTTT
ACAAAGATNN NNNNNNN

Translated Amino Acid Sequence Contig-U12780-1

LLAYWLKSNNGQLTTSTGSPHQSRLSLGGSTLVTKDIPESILLSRKGEKELIDTPKNFIQ
LKITCKEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSNRNVLICYFEGERILDNG
SEEILVDVTPSKNILLKAGTSEYNFPNAIAEFIDNSIQAVRLNPPGKREIKVTINRPNSD
LRTTSIRIWDNGCGMNKDALQRXXX

Homology Contig-U12780-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti...  1205  0.0
Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Conti...   553  e-158
Contig-U12493-1 (Contig-U12493-1Q) /CSM_Contig/Conti...   256  2e-68
Contig-U10521-1 (Contig-U10521-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U12630-1 (Contig-U12630-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14538-1 (Contig-U14538-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11111-1 (Contig-U11111-1Q) /CSM_Contig/Conti...    40  0.003

Homology Contig-U12780-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ337161) Dictyostelium discoideum cDNA clone:dda56a14, 5' ...  1205   0.0    1
(AU270891) Dictyostelium discoideum vegetative cDNA clone:VS...   452   0.0    3
(BJ403528) Dictyostelium discoideum cDNA clone:dds25m11, 3' ...   258   2e-64  1
(GR565805) CBTF1834.b1 CBTF Dictyostelium purpureum 12 hr ve...   153   3e-47  4
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   4e-04  18
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.002  16
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    38   0.002  16
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    38   0.007  14
(AF163834) Dictyostelium discoideum developmental protein DG...    32   0.013  5
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   0.023  15

Homology Contig-U12780-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116977_32(AC116977|pid:none) Dictyostelium discoideum chromoso...   394   e-108
AC150444_8(AC150444|pid:none) Medicago truncatula clone mth2-101...    50   5e-05
CP000813_644(CP000813|pid:none) Bacillus pumilus SAFR-032, compl...    45   0.002
CP000509_2236(CP000509|pid:none) Nocardioides sp. JS614, complet...    40   0.040
AJ235271_228(AJ235271|pid:none) Rickettsia prowazekii strain Mad...    40   0.052
AM426005_1(AM426005|pid:none) Vitis vinifera contig VV78X108753....    39   0.12
CP000393_252(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    38   0.20
CP000472_4302(CP000472|pid:none) Shewanella piezotolerans WP3, c...    37   0.44
CP000393_3129(CP000393|pid:none) Trichodesmium erythraeum IMS101...    36   0.76
CP000393_3130(CP000393|pid:none) Trichodesmium erythraeum IMS101...    35   1.3