Homology Contig-U12645-1 vs DNA
Query= Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Contig-U12645-1Q.Seq.d
(838 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ331054) Dictyostelium discoideum cDNA clone:dda33p15, 5' ... 821 0.0 3
(BJ369594) Dictyostelium discoideum cDNA clone:ddc51i06, 5' ... 819 0.0 3
(BJ365428) Dictyostelium discoideum cDNA clone:ddc35h10, 5' ... 815 0.0 3
(BJ333563) Dictyostelium discoideum cDNA clone:dda43n02, 5' ... 371 0.0 5
(BJ363344) Dictyostelium discoideum cDNA clone:ddc26m02, 5' ... 301 e-110 3
(BJ326764) Dictyostelium discoideum cDNA clone:dda17m23, 5' ... 301 e-110 3
(BJ361627) Dictyostelium discoideum cDNA clone:ddc18e02, 5' ... 301 e-110 3
(BJ386682) Dictyostelium discoideum cDNA clone:dds10g04, 5' ... 301 e-110 3
(BJ389797) Dictyostelium discoideum cDNA clone:dds20i03, 5' ... 301 e-110 3
(BJ387782) Dictyostelium discoideum cDNA clone:dds4p20, 5' e... 301 e-110 3
(BJ363092) Dictyostelium discoideum cDNA clone:ddc25g05, 5' ... 301 e-110 3
(BJ387965) Dictyostelium discoideum cDNA clone:dds7m02, 5' e... 301 e-110 3
(BJ326033) Dictyostelium discoideum cDNA clone:dda3b13, 5' e... 301 e-110 3
(BJ327773) Dictyostelium discoideum cDNA clone:dda21p18, 5' ... 301 e-110 3
(BJ326014) Dictyostelium discoideum cDNA clone:dda3m12, 5' e... 301 e-110 3
(BJ387479) Dictyostelium discoideum cDNA clone:dds2i22, 5' e... 301 e-110 3
(BJ387547) Dictyostelium discoideum cDNA clone:dds3d07, 5' e... 301 e-110 3
(BJ323587) Dictyostelium discoideum cDNA clone:dda11e08, 5' ... 301 e-110 3
(BJ358851) Dictyostelium discoideum cDNA clone:ddc11k14, 5' ... 301 e-110 3
(BJ324216) Dictyostelium discoideum cDNA clone:dda5g10, 5' e... 301 e-110 3
(BJ388644) Dictyostelium discoideum cDNA clone:dds6g15, 5' e... 301 e-110 3
(BJ324970) Dictyostelium discoideum cDNA clone:dda8o19, 5' e... 301 e-110 3
(BJ324160) Dictyostelium discoideum cDNA clone:dda5g04, 5' e... 301 e-110 3
(BJ324364) Dictyostelium discoideum cDNA clone:dda5o22, 5' e... 301 e-110 3
(BJ389830) Dictyostelium discoideum cDNA clone:dds20p06, 5' ... 301 e-110 3
(BJ390495) Dictyostelium discoideum cDNA clone:dds22k16, 5' ... 301 e-110 3
(BJ389943) Dictyostelium discoideum cDNA clone:dds20k13, 5' ... 301 e-110 3
(BJ358934) Dictyostelium discoideum cDNA clone:ddc12a03, 5' ... 301 e-110 3
(BJ359294) Dictyostelium discoideum cDNA clone:ddc13c19, 5' ... 301 e-110 3
(BJ359907) Dictyostelium discoideum cDNA clone:ddc3n06, 5' e... 301 e-108 3
(BJ360006) Dictyostelium discoideum cDNA clone:ddc3b23, 5' e... 301 e-108 3
(BJ325892) Dictyostelium discoideum cDNA clone:dda2g23, 5' e... 301 e-107 3
(BJ326089) Dictyostelium discoideum cDNA clone:dda3h23, 5' e... 301 e-107 3
(BJ386918) Dictyostelium discoideum cDNA clone:dds11j10, 5' ... 301 e-106 3
(BJ325576) Dictyostelium discoideum cDNA clone:dda1p09, 5' e... 155 e-105 4
(BJ328290) Dictyostelium discoideum cDNA clone:dda23k16, 5' ... 301 e-105 3
(BJ391378) Dictyostelium discoideum cDNA clone:dds13g13, 5' ... 289 e-105 3
(BJ324000) Dictyostelium discoideum cDNA clone:dda4d09, 5' e... 301 e-105 3
(BJ325132) Dictyostelium discoideum cDNA clone:dda9j22, 5' e... 301 e-105 3
(BJ390728) Dictyostelium discoideum cDNA clone:dds23c17, 5' ... 301 e-105 3
(BJ325041) Dictyostelium discoideum cDNA clone:dda9k09, 5' e... 301 e-101 2
(BJ390698) Dictyostelium discoideum cDNA clone:dds23m07, 5' ... 301 e-101 2
(BJ388002) Dictyostelium discoideum cDNA clone:dds7h09, 5' e... 278 e-101 3
(BJ358541) Dictyostelium discoideum cDNA clone:ddc10e04, 5' ... 147 6e-64 3
(GR574260) CBXU2042.b1 CBXU Dictyostelium purpureum 6 hr veg... 145 2e-47 3
(GR573566) CBXU1559.b1 CBXU Dictyostelium purpureum 6 hr veg... 133 6e-44 3
(BJ389087) Dictyostelium discoideum cDNA clone:dds17p07, 5' ... 121 4e-35 2
(BJ331679) Dictyostelium discoideum cDNA clone:dda36j14, 5' ... 153 1e-32 1
(GR580437) CBZY531.b1 CBZY Dictyostelium purpureum 18 hr sta... 98 1e-22 2
(AU262509) Dictyostelium discoideum vegetative cDNA clone:VS... 78 6e-10 1
(AL049860) Human DNA sequence from clone RP1-304O5 on chromo... 54 0.009 1
(AL512455) Human DNA sequence *** SEQUENCING CANCELLED *** f... 54 0.009 1
(AQ381177) RPCI11-164N24.TV RPCI-11 Homo sapiens genomic clo... 54 0.009 1
(AC180244) Strongylocentrotus purpuratus clone R3-34N06, WOR... 34 0.032 6
(AC155060) Bos taurus clone CH240-27E8, WORKING DRAFT SEQUEN... 50 0.15 1
(ET172034) MUGQ_CH252P374H07Sp6_CP705_026 CHORI-252 Vervet M... 48 0.57 1
(AC156209) Bos taurus clone CH240-43G19, WORKING DRAFT SEQUE... 42 0.87 5
(AC186382) Gallus gallus BAC clone CH261-127H11 from chromos... 36 1.2 2
(AC186348) Gallus gallus BAC clone CH261-169P5 from chromoso... 36 1.2 2
(AC006313) Homo sapiens chromosome 9, clone hRPK.465_F_21, c... 36 1.2 2
(AL162254) Human DNA sequence from clone RP11-64P14 on chrom... 36 1.2 2
(CC288103) CH261-130I19_Sp6.1 CH261 Gallus gallus genomic cl... 36 1.5 2
(AM473382) Vitis vinifera contig VV78X207699.3, whole genome... 34 1.9 3
(CU468844) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.0 4
(FI813492) SIR-68P6TF Sisymbrium irio BAC library SIR Sisymb... 38 2.1 2
(CU062581) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.2 4
(AC132610) Mus musculus BAC clone RP23-374N15 from chromosom... 46 2.3 1
(AC206529) Pongo abelii BAC clone CH276-80K7 from chromosome... 46 2.3 1
(AC193200) Pan troglodytes BAC clone CH251-687D5 from chromo... 46 2.3 1
(AC191867) Pan troglodytes BAC clone CH251-734F19 from chrom... 46 2.3 1
(AC232714) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 46 2.3 1
(AC087496) Homo sapiens chromosome 17, clone RP11-213B3, com... 46 2.3 1
(AC079920) Homo sapiens BAC clone RP11-325K1 from 7, complet... 46 2.3 1
(AC105820) Rattus norvegicus clone CH230-337A12, *** SEQUENC... 46 2.3 1
(AC069003) Homo sapiens chromosome 17 clone RP11-213B3, WORK... 46 2.3 1
(DE025835) Branchiostoma floridae DNA, clone: CH302-040P04.R... 46 2.3 1
(AM224771) Paracentrotus lividus EST, clone MPMGp1174D2055Q,... 46 2.3 1
(EU363462) Methanocaldococcus jannaschii MjaVIP (mjaVIRP) an... 36 3.3 3
(AM447163) Vitis vinifera contig VV78X077327.6, whole genome... 34 5.1 3
(DB664650) Saccharomyces cerevisiae mRNA, clone: Y093_O23_F.... 32 5.3 3
(DB664661) Saccharomyces cerevisiae mRNA, clone: Y093_P23_F.... 32 5.3 3
(AC206625) Zea mays chromosome 2 clone ZMMBBb-556E5; ZMMBBb0... 44 6.6 5
(AL928900) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 7.9 7
(AM483299) Vitis vinifera contig VV78X080940.7, whole genome... 44 9.0 1
(AC116274) Rattus norvegicus clone CH230-354B17, *** SEQUENC... 44 9.0 1
(FP236299) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.0 1
(FP236252) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.0 1
(CU914802) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.0 1
(AC229584) Zea mays chromosome 2 clone CH201-236J17; ZMMBBc0... 44 9.0 1
(AC224776) Bos taurus clone CH240-476P1, WORKING DRAFT SEQUE... 44 9.0 1
(AC218182) Bos taurus clone CH240-291P16, WORKING DRAFT SEQU... 44 9.0 1
(ED281035) AUAC-aau04g08.b1 Ascaris suum whole genome shotgu... 44 9.0 1
(ED257417) AUAC-aao32c02.b1 Ascaris suum whole genome shotgu... 44 9.0 1
(EE936692) H23111A FLM Bos taurus cDNA clone H2311 3', mRNA ... 44 9.0 1
(EB086590) 18KB-03-D01-PM0 Bovine SSH library; endometrium; ... 44 9.0 1
(DY206366) 000416BSIA999035HT BSIA Bos taurus cDNA 5', mRNA ... 44 9.0 1
(DN542709) 1391485 MARC 7BOV Bos taurus cDNA 5', mRNA sequence. 44 9.0 1
(DN541653) 1390253 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 44 9.0 1
(CK832285) 4056309 BARC 8BOV Bos taurus cDNA clone 8BOV_21K2... 44 9.0 1
(CB465609) 727667 MARC 6BOV Bos taurus cDNA 5', mRNA sequence. 44 9.0 1
(CB419831) 592718 MARC 6BOV Bos taurus cDNA 3', mRNA sequence. 44 9.0 1
(CB419472) 592334 MARC 6BOV Bos taurus cDNA 5', mRNA sequence. 44 9.0 1
(CP000436) Haemophilus somnus 129PT, complete genome. 44 9.0 1
>(BJ331054) Dictyostelium discoideum cDNA clone:dda33p15, 5' end,
single read.
Length = 634
Score = 821 bits (414), Expect(3) = 0.0
Identities = 414/414 (100%)
Strand = Plus / Plus
Query: 425 ccaatgcctagtacagttatggaagctttagaatatacatctaataaacatccaaattta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ccaatgcctagtacagttatggaagctttagaatatacatctaataaacatccaaattta 280
Query: 485 atggcaatgagagttaaacgtgataacgtttggaagggttggacatggcaacaatataga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atggcaatgagagttaaacgtgataacgtttggaagggttggacatggcaacaatataga 340
Query: 545 aatgaagtattgatggcaggtaaatcaattctttcattaggtgttcattcaagaagtggt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aatgaagtattgatggcaggtaaatcaattctttcattaggtgttcattcaagaagtggt 400
Query: 605 gttaatattattggtttcaattcaccagaatggcatattgcatatttaggtgcaattcat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gttaatattattggtttcaattcaccagaatggcatattgcatatttaggtgcaattcat 460
Query: 665 tgtaatgctttaccaactggtgtctatacaacttcatcaccaagtcaatgtgaatatttt 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgtaatgctttaccaactggtgtctatacaacttcatcaccaagtcaatgtgaatatttt 520
Query: 725 gcaactcattccgatgctcaaattgtattttgtgaagatgtcacccaattaaataaatat 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gcaactcattccgatgctcaaattgtattttgtgaagatgtcacccaattaaataaatat 580
Query: 785 attagtattagagataaattaccaaacattaaagcttgtattattatggatcca 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 attagtattagagataaattaccaaacattaaagcttgtattattatggatcca 634
Score = 77.8 bits (39), Expect(3) = 0.0
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 239 aacaacaactacaattgaaactaaaccagagacagcaga 277
|||||||||||||||||||||||||||||||||||||||
Sbjct: 37 aacaacaactacaattgaaactaaaccagagacagcaga 75
Score = 65.9 bits (33), Expect(3) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 390 ggaaatgttaaaaaaggaccaattaaaacaatt 422
|||||||||||||||||||||||||||||||||
Sbjct: 188 ggaaatgttaaaaaaggaccaattaaaacaatt 220
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,009,240,468
Number of extensions: 60640686
Number of successful extensions: 5114930
Number of sequences better than 10.0: 104
Length of query: 838
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 814
Effective length of database: 104,103,628,548
Effective search space: 84740353638072
Effective search space used: 84740353638072
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home