Homology Contig-U12606-1 vs DNA
Query= Contig-U12606-1 (Contig-U12606-1Q) /CSM_Contig/Contig-U12606-1Q.Seq.d
(833 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ355424) Dictyostelium discoideum cDNA clone:dda57d05, 3' ... 785 0.0 2
(BJ354291) Dictyostelium discoideum cDNA clone:dda53l02, 3' ... 761 0.0 2
(BJ438087) Dictyostelium discoideum cDNA clone:ddv36g08, 3' ... 726 0.0 3
(BJ407240) Dictyostelium discoideum cDNA clone:dds37m23, 3' ... 726 0.0 2
(BJ355148) Dictyostelium discoideum cDNA clone:dda55k24, 3' ... 722 0.0 2
(BJ352641) Dictyostelium discoideum cDNA clone:dda47m09, 3' ... 708 0.0 2
(BJ345059) Dictyostelium discoideum cDNA clone:dda21o12, 3' ... 700 0.0 2
(BJ355387) Dictyostelium discoideum cDNA clone:dda56l14, 3' ... 658 0.0 2
(BJ353514) Dictyostelium discoideum cDNA clone:dda50p11, 3' ... 658 0.0 2
(BJ347194) Dictyostelium discoideum cDNA clone:dda26k08, 3' ... 658 0.0 2
(BJ346813) Dictyostelium discoideum cDNA clone:dda25k03, 3' ... 658 0.0 2
(BJ343535) Dictyostelium discoideum cDNA clone:dda16j12, 3' ... 658 0.0 2
(BJ351350) Dictyostelium discoideum cDNA clone:dda42k22, 3' ... 654 0.0 2
(C92743) Dictyostelium discoideum slug cDNA, clone SSF181. 658 0.0 2
(AU072822) Dictyostelium discoideum slug cDNA, clone SSF181. 476 e-130 1
(BJ347894) Dictyostelium discoideum cDNA clone:dda31c18, 3' ... 206 e-116 9
(BJ348406) Dictyostelium discoideum cDNA clone:dda33j06, 3' ... 200 e-116 8
(BJ354070) Dictyostelium discoideum cDNA clone:dda52m12, 3' ... 198 e-107 8
(BJ354747) Dictyostelium discoideum cDNA clone:dda54i18, 3' ... 194 e-106 8
(BJ444956) Dictyostelium discoideum cDNA clone:ddv58a05, 3' ... 200 e-105 7
(BJ354345) Dictyostelium discoideum cDNA clone:dda53g10, 3' ... 155 e-103 8
(BJ355316) Dictyostelium discoideum cDNA clone:dda56m10, 3' ... 153 e-102 8
(BJ348765) Dictyostelium discoideum cDNA clone:dda34e08, 3' ... 149 e-101 8
(BJ357798) Dictyostelium discoideum cDNA clone:dda64a23, 3' ... 145 6e-98 8
(BJ348693) Dictyostelium discoideum cDNA clone:dda34d05, 3' ... 145 1e-97 9
(BJ406036) Dictyostelium discoideum cDNA clone:dds33m23, 3' ... 145 3e-96 7
(BJ350137) Dictyostelium discoideum cDNA clone:dda38i19, 3' ... 165 2e-95 8
(BJ349215) Dictyostelium discoideum cDNA clone:dda35c23, 3' ... 145 3e-93 8
(BJ433299) Dictyostelium discoideum cDNA clone:ddv21j10, 3' ... 153 2e-92 7
(BJ342823) Dictyostelium discoideum cDNA clone:dda15b02, 3' ... 145 2e-89 8
(BJ358013) Dictyostelium discoideum cDNA clone:dda65a15, 3' ... 145 2e-86 8
(BJ384013) Dictyostelium discoideum cDNA clone:ddc47n23, 3' ... 127 3e-84 7
(BJ405712) Dictyostelium discoideum cDNA clone:dds32m16, 3' ... 121 3e-83 7
(BJ355575) Dictyostelium discoideum cDNA clone:dda57e14, 3' ... 145 3e-79 9
(BJ415083) Dictyostelium discoideum cDNA clone:ddv21j10, 5' ... 274 8e-72 2
(BJ353401) Dictyostelium discoideum cDNA clone:dda50f01, 3' ... 119 2e-70 7
(BJ357559) Dictyostelium discoideum cDNA clone:dda63n20, 3' ... 145 3e-69 8
(BJ429482) Dictyostelium discoideum cDNA clone:ddv3l13, 3' e... 119 1e-64 8
(BJ381726) Dictyostelium discoideum cDNA clone:ddc42o11, 3' ... 139 5e-62 7
(BJ355562) Dictyostelium discoideum cDNA clone:dda57b14, 3' ... 131 8e-60 7
(BJ381782) Dictyostelium discoideum cDNA clone:ddc42k16, 3' ... 129 2e-59 7
(BJ439589) Dictyostelium discoideum cDNA clone:ddv40o20, 3' ... 113 5e-54 7
(BJ382061) Dictyostelium discoideum cDNA clone:ddc43c22, 3' ... 80 4e-45 7
(BJ329483) Dictyostelium discoideum cDNA clone:dda25k03, 5' ... 90 2e-27 2
(CP000153) Sulfurimonas denitrificans DSM 1251, complete gen... 40 0.044 15
(AC124408) Mus musculus BAC clone RP24-262E22 from chromosom... 38 0.13 5
(AG074403) Pan troglodytes DNA, clone: PTB-066H22.F. 36 0.41 2
(ER626850) 1093018265711 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.57 1
(EJ786711) 1093017354138 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.57 1
(EJ782822) 1093017289105 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.57 1
(EJ513360) 1095427395498 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.57 1
(EJ125023) 1092343390676 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.57 1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 1.5 17
(EJ035817) 1095454068602 Global-Ocean-Sampling_GS-26-01-01-1... 38 1.6 2
(AC180894) Strongylocentrotus purpuratus clone R3-3067E07, W... 34 1.6 5
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 44 1.6 8
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 1.7 5
(AL645848) Mouse DNA sequence from clone RP23-133B13 on chro... 46 2.3 1
(GP148260) Sequence 17723 from patent US 7482117. 46 2.3 1
(GM887607) Sequence 74 from Patent WO2008137089. 46 2.3 1
(AP006256) Homo sapiens genomic DNA, chromosome 9, clone:RP1... 46 2.3 1
(AL592287) Human DNA sequence from clone RP11-107P1 on chrom... 46 2.3 1
(AL353141) Human DNA sequence from clone RP11-58C3 on chromo... 46 2.3 1
(AB020878) Homo sapiens genomic DNA of 9q32 anti-oncogene of... 46 2.3 1
(AC128963) Rattus norvegicus clone CH230-8P1, WORKING DRAFT ... 46 2.3 1
(AC112590) Rattus norvegicus clone CH230-271M1, *** SEQUENCI... 46 2.3 1
(AC074241) Homo sapiens chromosome 1 clone RP11-107P1, WORKI... 46 2.3 1
(AC011192) Homo sapiens clone RP11-53A1, WORKING DRAFT SEQUE... 46 2.3 1
(ER399576) 1095349042353 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.3 1
(BZ124133) CH230-489P12.TJ CHORI-230 Segment 2 Rattus norveg... 46 2.3 1
(BX548174) Prochlorococcus marinus MED4 complete genome. 46 2.3 1
(EA741028) Sequence 12474 from patent US 7368527. 36 2.4 3
(AC201933) MACACA MULATTA BAC clone CH250-7N13 from chromoso... 42 3.6 3
(CR354434) Zebrafish DNA sequence from clone DKEY-247F17 in ... 36 3.7 5
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 36 3.8 14
(AC145854) Sus scrofa clone RP44-521F12, WORKING DRAFT SEQUE... 34 4.3 2
(CU104767) Zebrafish DNA sequence from clone CH73-389D14 in ... 34 4.5 2
(EK003529) 1093134007910 Global-Ocean-Sampling_GS-30-02-01-1... 40 5.5 2
(DT931952) BMSB16575 Hematopoietic stem cells Mus musculus c... 32 5.7 3
(AC212652) Solanum lycopersicum chromosome 7 clone C07SLm007... 32 5.7 6
(AC111229) Rattus norvegicus clone CH230-112C1, WORKING DRAF... 40 6.9 3
(BX936419) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 7.3 6
(EJ817311) 1093017521730 Global-Ocean-Sampling_GS-30-02-01-1... 42 7.4 2
(AC144827) Danio rerio clone CH211-77C11, complete sequence. 36 7.5 5
(AC163674) Mus musculus chromosome 12 clone RP23-19B13, WORK... 34 8.4 9
(EK089943) 1092961207636 Global-Ocean-Sampling_GS-31-01-01-1... 32 8.7 3
(BV069761) S212P6556FE10.T0 CZECHII/Ei Mus musculus STS geno... 44 8.9 1
(AC162521) Mus musculus chromosome 7, clone RP23-356O13, com... 44 8.9 1
(AC156985) Mus musculus chromosome 7, clone RP23-417L14, com... 44 8.9 1
(AC154788) Mus musculus BAC clone RP24-470E2 from chromosome... 44 8.9 1
(AC154226) Mus musculus BAC clone RP24-353J14 from chromosom... 44 8.9 1
(AC154024) Mus musculus 6 BAC RP24-137K15 (Roswell Park Canc... 44 8.9 1
(AC120846) Mus musculus chromosome 7, clone RP24-317L6, comp... 44 8.9 1
(AC115738) Mus musculus chromosome 3, clone RP23-474P24, com... 44 8.9 1
(AM431853) Vitis vinifera contig VV78X080125.12, whole genom... 44 8.9 1
(AL390865) Human DNA sequence from clone RP11-161L14 on chro... 44 8.9 1
(AL354743) Human DNA sequence from clone RP4-785P20 on chrom... 44 8.9 1
(AC145726) Zea mays clone ZMMBBc0003A01, *** SEQUENCING IN P... 44 8.9 1
(AC106302) Rattus norvegicus clone CH230-99B3, WORKING DRAFT... 44 8.9 1
(CU633944) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.9 1
(AC087133) Mus musculus clone RP23-133E17, WORKING DRAFT SEQ... 44 8.9 1
(AL596063) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 8.9 1
(AC219982) Bos taurus clone CH240-317B12, WORKING DRAFT SEQU... 44 8.9 1
(AC191311) Zea mays chromosome 1 clone CH201-3A1; ZMMBBc0003... 44 8.9 1
(AC177571) Bos taurus clone CH240-382D15, WORKING DRAFT SEQU... 44 8.9 1
(AC167607) Bos taurus clone CH240-109G17, WORKING DRAFT SEQU... 44 8.9 1
(AZ089913) RPCI-23-457O8.TJ RPCI-23 Mus musculus genomic clo... 44 8.9 1
(FI715388) BOT01-65O19TR BOT01 Brassica oleracea genomic clo... 44 8.9 1
(FH553047) CHO_OF4788xg19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 8.9 1
(ET809154) CHO_OF715xg04r1.ab1 CHO_OF Nicotiana tabacum geno... 44 8.9 1
(ER577901) 1093015819662 Global-Ocean-Sampling_GS-36-01-01-2... 44 8.9 1
(CR167423) Forward strand read from insert in 3'HPRT inserti... 44 8.9 1
(AG524617) Mus musculus molossinus DNA, clone:MSMg01-432K09.... 44 8.9 1
(CC855971) NDL.118B9.T7 Notre Dame Liverpool Aedes aegypti g... 44 8.9 1
(EB495725) 1099435198111 12-DrosW-norm-1P5Kb Drosophila will... 44 8.9 1
(CO578973) ILLUMIGEN_MCQ_50818 Katze_MMIL Macaca mulatta cDN... 44 8.9 1
(BB717767) Mus musculus adult male liver tumor cDNA, RIKEN f... 44 8.9 1
(GR064755) CCIF6069.g1 CCIF Mimulus guttatus IM62 leaves (H)... 44 8.9 1
(GO997327) CCIG13471.g1 CCIG Mimulus guttatus DUN10 floral b... 44 8.9 1
(GE905658) 1112997694480 BABEVCEREB-C-01-1-7KB Papio anubis ... 44 8.9 1
(FC124151) 1106878614535 BABEVPN-C-01-1-7KB Papio anubis cDN... 44 8.9 1
(BX901978) Zebrafish DNA sequence from clone DKEY-155M6 in l... 34 9.1 6
>(BJ355424) Dictyostelium discoideum cDNA clone:dda57d05, 3' end,
single read.
Length = 787
Score = 785 bits (396), Expect(2) = 0.0
Identities = 396/396 (100%)
Strand = Plus / Minus
Query: 21 agaattcaattggaaagtttttaaatacccttatcaaagaaaatcaagaatttatttcaa 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agaattcaattggaaagtttttaaatacccttatcaaagaaaatcaagaatttatttcaa 725
Query: 81 gagtaaatcatcttcagttaagcggaatcttgaatattacagttaaaacaggatatatta 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gagtaaatcatcttcagttaagcggaatcttgaatattacagttaaaacaggatatatta 665
Query: 141 gaactaaattcatttttaatcgaaaagatatcactaaaacctcaaaaaccaaatgctttt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaactaaattcatttttaatcgaaaagatatcactaaaacctcaaaaaccaaatgctttt 605
Query: 201 atgatcatttaaattcaactctttatataggcatagaaaaaggtattaccataagtaaag 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atgatcatttaaattcaactctttatataggcatagaaaaaggtattaccataagtaaag 545
Query: 261 cattcaaatacctatttaactccactggtttgaatgtaaacccctcaatggtatcaaatc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cattcaaatacctatttaactccactggtttgaatgtaaacccctcaatggtatcaaatc 485
Query: 321 taaaaagagagtttgttaatgatgaaccaactgatgataatttattcttgactctaaacg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taaaaagagagtttgttaatgatgaaccaactgatgataatttattcttgactctaaacg 425
Query: 381 ttgttaattttgttgatgttaaccaaacaaaaatcc 416
||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgttaattttgttgatgttaaccaaacaaaaatcc 389
Score = 658 bits (332), Expect(2) = 0.0
Identities = 332/332 (100%)
Strand = Plus / Minus
Query: 424 tcaatgtagacactacaacaccattgcattaagaaattttcaacttgctgatactttact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatgtagacactacaacaccattgcattaagaaattttcaacttgctgatactttact 322
Query: 484 caacaatcaatcatttataagagaagcctcataccattactatgtttcaacagaaatgtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaatcaatcatttataagagaagcctcataccattactatgtttcaacagaaatgtc 262
Query: 544 aatgagaagtcttttggtttttaattataatgatatcccctatgctttttcaattactcg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgagaagtcttttggtttttaattataatgatatcccctatgctttttcaattactcg 202
Query: 604 tttaagaggtttattatctagaataagtattacaactgaaaccataccacagattccaga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaagaggtttattatctagaataagtattacaactgaaaccataccacagattccaga 142
Query: 664 tctttacaataattacagacacactcatttaaaaaatgaagaaatcaatcgtagggaact 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tctttacaataattacagacacactcatttaaaaaatgaagaaatcaatcgtagggaact 82
Query: 724 attaagatttcgttcaatttcaaatcaattat 755
||||||||||||||||||||||||||||||||
Sbjct: 81 attaagatttcgttcaatttcaaatcaattat 50
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,148,548,380
Number of extensions: 70559245
Number of successful extensions: 5543533
Number of sequences better than 10.0: 123
Length of query: 833
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 809
Effective length of database: 104,103,628,548
Effective search space: 84219835495332
Effective search space used: 84219835495332
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home