Dictyostelium discoideum cDNA Contig-U12590-1

Assembled

Chromosomal Location of Contig-U12590-1

NO HIT FOUND.

Sequence Contig-U12590-1

GACCCACGAC GTCCGCAAAA ACAAAAACAA AAACAAAAAC AAAAACAAAT
AAAAAAGTAA ACAAAAAATA AAATTAATTA TTATTAAATA AATAAAAAAA
AA-------- --TCCGAAAT AAATAAATAA ATAAATAAAT AAATAAATAA
ATAAATAAAT AATAGATTAA TAAATAAATA AATAAATAAA TAATAAATTA
ATAAATTAAT AAATTGATAA ATTAATCAGA AAATGGCAAC AATCTTTGAT
ATTTTAAATA CTCTTAATAA TAATAATAAT AATAATAATT TTGAAAATTG
TAAAAGACAA TGTCCAATTA ATAAAAGCAA TAAAACCAAN TTATTGATAT
ACTACCCACC AATGGATGTA ACAATGACAA ATGATAAACT AATCCATTGA
AACAGAGTTA GCAGGTATTT CAAAAGATCA AATTGAAATT GACATTAAAG
ATTCAATACT CACCCATTCA AGGTGAAAAG AAAAAGAATT TAAATAAACA
ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA TTAGTTATAG
AAAAATCATC AACATCACCA TCATCATCAA CATTAGATAG CAAAGAAAAC
GGACCATCAA TTGAAGAGTT TGAAGATGAT ATTAACCCAA ACTCAACCAC
CAGTACTACA ACTGTATCTA CTACAACCAC CGCCACCACT AAAGAGAACA
AAGAAGATGA AAATAAAACA AAATCAACTG ATAAAAAGTT TATTTCAGAA
AGATCATTTG GTAATTTTAA AAGATATTTA GATTTAACAA AAATTTTATA
TCAATTAGAT TTAAATTCAA TCAATACTCA ATTTGAAAAT GGTTTATTAA
CAATTACAAT CAATAAGAAA TTACATTATT CAAATACAAT TAAAATTAAT
ATAAATTAAC CAGTGGTCAC CTTTATTTTC CTATTCTTTA CAATTCTGAA
AATACATGTA CATAATATTA ATAAATTTTA ATAAATTATT ATTTCTTTAA
AATTATTTAA ATAAAAAACT TTAAAAAAGG TAAATAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAA

Translated Amino Acid Sequence Contig-U12590-1

dprrpqkqkqkqkqkqikk*tknkinyy*INKKK---

---SEINK*ink*ink*innrlink*ink**inklin**inqkmatifdilntlnnnnnn
nnfenckrqcpinksnktxlliyyppmdvtmtndklih*nrvsryfkrsn*n*h*rfnth
pfkvkrkri*innnnnnnnnnnnnnn*l*knhqhhhhhqh*iakktdhqlkslkmiltqt
qppvlqlyllqpppplkrtkkmkikqnqlikslfqkdhlvilkdi*i*qkfyin*i*iqs
ilnlkmvy*qlqsirnyiiqiqlkli*inqwsplfsyslqf*kymyiilinfnkllfl*n
ylnkkl*kr*ikkkkkkkkkkkk

Homology Contig-U12590-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12590-1 (Contig-U12590-1Q) /CSM_Contig/Conti...   835  0.0
Contig-U14670-1 (Contig-U14670-1Q) /CSM_Contig/Conti...   359  4e-99
Contig-U14902-1 (Contig-U14902-1Q) /CSM_Contig/Conti...    90  6e-18
Contig-U05787-1 (Contig-U05787-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U01201-1 (Contig-U01201-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U11849-1 (Contig-U11849-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U10675-1 (Contig-U10675-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Conti...    42  0.001

Homology Contig-U12590-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU265349) Dictyostelium discoideum vegetative cDNA clone:VS...   313   0.0    6
(BJ408144) Dictyostelium discoideum cDNA clone:dds44h22, 3' ...   287   0.0    9
(C92570) Dictyostelium discoideum slug cDNA, clone SSE777.        287   0.0    8
(AU263152) Dictyostelium discoideum vegetative cDNA clone:VS...   287   0.0    8
(BJ407938) Dictyostelium discoideum cDNA clone:dds44k05, 3' ...   371   0.0    7
(AU265348) Dictyostelium discoideum vegetative cDNA clone:VS...   236   0.0    8
(AU262135) Dictyostelium discoideum vegetative cDNA clone:VS...   287   0.0    6
(AU263343) Dictyostelium discoideum vegetative cDNA clone:VS...   287   e-171  6
(AU270225) Dictyostelium discoideum vegetative cDNA clone:VS...   295   e-155  6
(AU061866) Dictyostelium discoideum slug cDNA, clone SLG395.      295   e-155  5

Homology Contig-U12590-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q550E9) RecName: Full=Small heat shock protein hspG8;                148   5e-56
(Q8MPA7) RecName: Full=Small heat shock protein hspG5;  &AC11695...   145   2e-55
(Q86KF5) RecName: Full=Small heat shock protein hspG9;  &AC11696...   146   2e-55
AC116967_4(AC116967|pid:none) Dictyostelium discoideum chromosom...   140   5e-45
(Q551G1) RecName: Full=Small heat shock protein hspG4;                104   7e-34
(Q552K9) RecName: Full=Small heat shock protein hspG2;                 92   5e-29
AC116967_6(AC116967|pid:none) Dictyostelium discoideum chromosom...   117   9e-25
AC116550_9(AC116550|pid:none) Dictyostelium discoideum chromosom...   102   2e-20
(Q550E3) RecName: Full=Small heat shock protein hspG11;                69   7e-18
(Q86I25) RecName: Full=Small heat shock protein hspG1;  &AC11630...    82   3e-14