Dictyostelium discoideum cDNA Contig-U12577-1

Assembled

Chromosomal Location of Contig-U12577-1

Sequence Contig-U12577-1

CATCATCATT ATCAATTTGT TCATTTACAA ATGAAAAGAG TAAATCTTTT
TTAAATGCTG TTGTATCTCA ATCATCAAGA AACTATTGTA CAACTAATGG
AGAAGAAAAA CCAAAATTAA GACATGTTTT AAAAAAGTTT TATTTAATGA
TTCATCCAGA TACATTAACT CAATATCCAA ATGAAAAGCA TGTTAATTCA
AATAGTATGA AAGCACTTAT GTCAATTGTT GATGAATATA AAAAAAGACC
AACACCAGAT TCACAAACAA AAAGAAATGT TCAAAAATTA ACTTTTTATG
TACCAGAAGA TAAAATATCA GGTGAAGAAG CACCAACATC AATTGGTGAT
CGTAAATTTA AAATTATTGA ATCAGAATTT TGTCAATATT CAA-------
---GAGATTG ATAATGTTGA TAATGTAATT CAACCAACAA TCGATGGATC
ATTACAAAAT TTCATTTTAG ATAATAAACA TTACATTAAA AAAAAATTAC
AAATTTCAGA GAAACATAAA TCTGAACTAG ACGCATTGGT ACGTAAAATC
AAGAGAGATT TAAGAGTGGG TGTTACAATT GAAACCAATC CAGTTGACTC
ATCATTCACA TTCCAAGAGA ATTATCATGC ATTATTACAC TTTCAAAATG
TTGTTAAAGA GTGGAAAGAC AAAGTGGCAG CTGACGCCAA AGACGGCTCA
GAAATTGTAA CAAGTGGTCA ATTTAAATTT AATCTTAATT ACAATGACAT
CAATTTCACA GTACCAGAAT TATGCTGTTA TTTAGATCGT TCTTCACCAG
ATACTTGGGC TGAATATTTA AATAAATTAA ATCTTTCACT TATTAAAGAG
GAGAATTTAG AATTTAGAAA ATCTGAAGAA GCTAAATTTA AAATAATGAA
AAAAGAATCT GAAGAAGCTA GATCCAATTT CACAATACTT GAAAAATTAT
TAAAATGTCG TTCTTTCCAA TTGGCTGAAC ATGATGATCC ATCTGAAGAT
CCAAATCTTT ATTTAGATAC AAGTAAACAA ATCACTCAAT CATTAGCTTT
CACTTCAATG TTAATCAAAA ATAAATCCAA ATTAGAAAAT TTAATGAAAA
CAAGATTAAA AAAAGTTAAA TTTGGTAATA TTGCAATTGT AGCAAATTTA
CATAAAAGTA AATTTTGGGT AGATATTGAT GGTAATTTAA AGATTAATCC
AAATGTTACA TTTGAAGAAT TTTGTGATAT TTTAGAAAGT CAACATAAGA
TTGCAAATGA AAAAGATATA TTATCACATA AATATGAATC AATTAGAGAT
TATGCTCAAG TTAGAATGGG TTTAAAGACT TTAAATGTTT TATCCGTATT
CACTTACACT CATGATCATC AAAAAGTATT TGATGCATAT CAAAAATTAT
ATGATGCTGC CGATCGTCTT CGTGATCTCG ATTTAAGTGG TTTCTCAATC
ATCATAGCTG ATCATTATAA TATTACAAAA TCTGGAAATT TGATAATAAA
ATATGATTTC AATACTGAAG ATTTAATTAA ACAATTATCA GCTGCAACAA
AAGATGTAAA AGAAGAAGAA GAAGAAGAAC AACCAATTAA TGAAATAAAA
CAACAACAAC AACAACAACA ACAAGAGGAT ATTAAAATTG ATTTAACAAA
TATTTCAAAT GTTTTAGAAC AATATGAAAA TCAAAGTAAA TCAAATAATA
ATAATAAAAC TTTATAAAAT TAAAATTAAA TAAAATTTTA AAAAAATAAT
TTATTTTTTT TTATAATACT CTAAAAAAAA A

Translated Amino Acid Sequence Contig-U12577-1

SSLSICSFTNEKSKSFLNAVVSQSSRNYCTTNGEEKPKLRHVLKKFYLMIHPDTLTQYPN
EKHVNSNSMKALMSIVDEYKKRPTPDSQTKRNVQKLTFYVPEDKISGEEAPTSIGDRKFK
IIESEFCQYS---

---EIDNVDNVIQPTIDGSLQNFILDNKHYIKKKLQISEKHKSELDALVRKIKRDLRVGV
TIETNPVDSSFTFQENYHALLHFQNVVKEWKDKVAADAKDGSEIVTSGQFKFNLNYNDIN
FTVPELCCYLDRSSPDTWAEYLNKLNLSLIKEENLEFRKSEEAKFKIMKKESEEARSNFT
ILEKLLKCRSFQLAEHDDPSEDPNLYLDTSKQITQSLAFTSMLIKNKSKLENLMKTRLKK
VKFGNIAIVANLHKSKFWVDIDGNLKINPNVTFEEFCDILESQHKIANEKDILSHKYESI
RDYAQVRMGLKTLNVLSVFTYTHDHQKVFDAYQKLYDAADRLRDLDLSGFSIIIADHYNI
TKSGNLIIKYDFNTEDLIKQLSAATKDVKEEEEEEQPINEIKQQQQQQQQEDIKIDLTNI
SNVLEQYENQSKSNNNNKTL*n*n*ikf*knnlfffiil*kk

Homology Contig-U12577-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12577-1 (Contig-U12577-1Q) /CSM_Contig/Conti...  2894  0.0
Contig-U11236-1 (Contig-U11236-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U09476-1 (Contig-U09476-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U01994-1 (Contig-U01994-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U14772-1 (Contig-U14772-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U11831-1 (Contig-U11831-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U09153-1 (Contig-U09153-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U03282-1 (Contig-U03282-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U02098-1 (Contig-U02098-1Q) /CSM_Contig/Conti...    38  0.032

Homology Contig-U12577-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU267011) Dictyostelium discoideum vegetative cDNA clone:VS...   726   0.0    3
(AU267010) Dictyostelium discoideum vegetative cDNA clone:VS...   474   0.0    2
(AU268280) Dictyostelium discoideum vegetative cDNA clone:VS...    92   9e-14  1
(AU268279) Dictyostelium discoideum vegetative cDNA clone:VS...    92   9e-14  1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.001  17
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    36   0.014  19
(CP000993) Borrelia recurrentis A1, complete genome.               34   0.032  24
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   0.082  19
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   0.083  19
(CU914571) Phaseolus vulgaris sequence from BAC clone pva1-3...    40   0.097  5

Homology Contig-U12577-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AL832473_1(AL832473|pid:none) Homo sapiens mRNA; cDNA DKFZp313N0...    46   0.005
(Q66JZ4) RecName: Full=Uncharacterized protein C3orf23 homolog; ...    45   0.007
BC123041_1(BC123041|pid:none) Xenopus tropicalis hypothetical pr...    45   0.009
BC149840_1(BC149840|pid:none) Bos taurus chromosome 3 open readi...    45   0.009
BC101058_1(BC101058|pid:none) Homo sapiens chromosome 3 open rea...    44   0.019
AE014296_1121(AE014296|pid:none) Drosophila melanogaster chromos...    42   0.056
CR382123_468(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    40   0.28
FM178379_668(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c...    40   0.28
AF295166_1(AF295166|pid:none) Gubernetes yetapa c-myc proto-onco...    39   0.47
EF084757_1(EF084757|pid:none) Picea sitchensis clone WS0274_G15 ...    39   0.47